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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.18G091600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Trihelix | ||||||||
Protein Properties | Length: 617aa MW: 67612.3 Da PI: 6.3214 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 92.2 | 5.4e-29 | 85 | 169 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r+++ k+plWee+s+k++e g++rs+k+Ckek+en+ k++k+++eg+ ++ ++ +t+++fdqlea Manes.18G091600.1.p 85 RWPRQETLALLKIRSDMDVAFRDASVKGPLWEEISRKLAELGYNRSAKKCKEKFENVFKYHKRTREGRTGK--QEGKTYRFFDQLEA 169 8********************************************************************96..55557*******85 PP | |||||||
2 | trihelix | 101.1 | 9e-32 | 445 | 530 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r++++ ++ ++ k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a Manes.18G091600.1.p 445 RWPKVEVEALIKLRTNLDCKYPDNGPKGPLWEDISAGMRKLGYNRSAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 530 8********************************************************************97.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 8.0E-5 | 82 | 144 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.259 | 84 | 142 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.18E-25 | 84 | 149 | No hit | No description |
Pfam | PF13837 | 8.1E-19 | 84 | 169 | No hit | No description |
SMART | SM00717 | 0.0051 | 442 | 504 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.213 | 444 | 502 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-4 | 444 | 501 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 2.26E-25 | 444 | 509 | No hit | No description |
Pfam | PF13837 | 7.5E-22 | 444 | 531 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 617 aa Download sequence Send to blast |
MLGDSSTVLA TTTTAAAAAG GDGGVAAASA GGSSSDAPPP SHQLPGGGGV AHESTSEVAQ 60 VGSNNSFEDD KGRGDEGDRS FGGNRWPRQE TLALLKIRSD MDVAFRDASV KGPLWEEISR 120 KLAELGYNRS AKKCKEKFEN VFKYHKRTRE GRTGKQEGKT YRFFDQLEAF ENHASSSSLS 180 SQPPPPPPPQ TQPQQVKPQT PAVTTIAMPV VNPPITTVPS TTTKAAPLAA NMSQGIVSTG 240 INLSIPSFPP ANPTILPSAQ ATTNPTTNPS LFSNFSPDLF SNSTSSSTSS DVELHGRHGK 300 KRKWKDFFER IMKEVIHKQE DMQRKFLEAI AKREHDRMIR EESWRMQEMT RINREREILA 360 QERSMAAAKD AAIMAFLQKL SDQQNPGQVP AQPPAAAQQP PPPQPTPQPI TVVPVAPAAP 420 AQPVINLDMK SGNGDQSFSP ASSSRWPKVE VEALIKLRTN LDCKYPDNGP KGPLWEDISA 480 GMRKLGYNRS AKRCKEKWEN INKYFKKVKE SNKRRPEDSK TCPYFHQLDA LYKNKNKSDP 540 SSNIQLKPEN SVPLMVRPEQ QWPPAEEEHN PADSVMEDLE SDHQDEDDKD NDDDEDEEDE 600 AGGYEIVANR PSAAAG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.18G091600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021601133.1 | 0.0 | trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-145 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A2C9U2N2 | 0.0 | A0A2C9U2N2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_003781m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-153 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.18G091600.1.p |