PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G091500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 447aa    MW: 51431.3 Da    PI: 6.9442
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G091500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.21.2e-24121216184
             trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 
                          +W+++ v++Li+a+++++e++++++           +kk++W+ vs++m+ergf++sp+qC++k+++lnkrykk++e+ +++ +++++++
  Manes.18G091500.1.p 121 KWSDKTVRLLITAVSYIGEDISSECdgvlrrklavlQKKGKWKLVSNVMAERGFHVSPQQCEDKFNDLNKRYKKLNEMLGRGtSCQVVEN 210
                          7*********************99888999999999**********************************************56899988 PP

             trihelix  79 cpyfdq 84 
                            ++d 
  Manes.18G091500.1.p 211 PELLDV 216
                          887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-22121244No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MERNFSQGGL IPGGASFGGL ALRGSIRLGH QAQYQHAVHQ QQHLSRRQGS SIHPSVHEEV  60
PLTIGTVNNS DKTISLINYN KGDKGKNSPS DEDEANYAED GDDDHNEASR GNKGLPWQRI  120
KWSDKTVRLL ITAVSYIGED ISSECDGVLR RKLAVLQKKG KWKLVSNVMA ERGFHVSPQQ  180
CEDKFNDLNK RYKKLNEMLG RGTSCQVVEN PELLDVIHYL TEKEKDEVRK ILSSKHLFYE  240
EMCSYHNGNR LHLPHDPPLQ HSLKLALRSK DDHDNHDMKR NQHDDLDENN QEVETDDHDE  300
FEENHASHGE SRGIYGVSRG SMKRLRQGQA HDDACFRNSS QDGNKGSYSH LQIGQVDMNQ  360
MSSESTRAAW LQKQWIESRT LQLEEQKLQI QLEMLELEKQ RMKWKTFSRK RDHELEKMRM  420
ENERMKLENK RMAMELKGKE IGADFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G091500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600103.10.0uncharacterized protein LOC110605780
TrEMBLA0A2C9U1Y00.0A0A2C9U1Y0_MANES; Uncharacterized protein
STRINGcassava4.1_034370m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-148sequence-specific DNA binding transcription factors