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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Manes.18G091000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family |
Trihelix |
Protein Properties |
Length: 448aa MW: 51657.5 Da PI: 6.2089 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Manes.18G091000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 78.2 | 1.3e-24 | 121 | 217 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78
+Wt+++v++Li+a+++++e+ +++ +kk++W+++sk+m+erg +sp+qC++k+++lnkrykk++++ +++ +++++++
Manes.18G091000.1.p 121 KWTDKMVRLLITAVSYIGEDATSDCgggmrrkfavlQKKGKWKSISKVMAERGHLVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVEN 210
7*********************99888999999999**********************************************56999988 PP
trihelix 79 cpyfdql 85
+++d +
Manes.18G091000.1.p 211 PALLDVI 217
8887765 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Pfam | PF13837 | 1.7E-22 | 119 | 244 | No hit | No description |
Sequence ? help Back to Top |
Protein Sequence Length: 448 aa
Download sequence Send
to blast |
MEGNLSQGSM IPGGNPFGGL DLQGSIRVHQ QAQHQHSVPH QQHPLHRQGS SVHPSIHEGF 60 PLTMGTMHNS DQIISMTDYS KGDKGKNSAS DDDEPSYTED GADGHNDASR GRKGSPWQRV 120 KWTDKMVRLL ITAVSYIGED ATSDCGGGMR RKFAVLQKKG KWKSISKVMA ERGHLVSPQQ 180 CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKEDVRK ILSSKHLFYE 240 EMCSYHNGNR LHLPHDPALQ RSLQLALRSK DDHDNDDVRK HQHDDIDDDD DQEVEIDDHD 300 ELEENQPEHG DSRRMHGVLD PSVKRFRQGQ CLEDACFGNS SQDGNKGSYS HLQIAQVDMN 360 QVSSESTRAA WLQKQWIESR MVQLEEQKLQ IQQEMLELEK QRFKWQRFCW KRDRELEKLR 420 MENERMKLEN ERMELELKRK EMSIEFT*
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G21200.1 | 1e-155 | sequence-specific DNA binding transcription factors |