PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G063800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 266aa    MW: 30882.3 Da    PI: 5.3009
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G063800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-1857110356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k++++t eq+++Le+ Fe ++++  e++ +LA++lgL++rqV +WFqNrRa++k
  Manes.18G063800.1.p  57 KKRRLTLEQVKALEKSFEVENKLEPEKKLKLAEELGLQQRQVAIWFQNRRARWK 110
                          56689************************************************9 PP
2HD-ZIP_I/II120.58.5e-3956148193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrl+ eqvk+LE+sFe e+kLepe+K +la+eLglq+rqva+WFqnrRAR+ktkqlE++y aLk++y+alk + ++Le+++e+L+ +
  Manes.18G063800.1.p  56 EKKRRLTLEQVKALEKSFEVENKLEPEKKLKLAEELGLQQRQVAIWFQNRRARWKTKQLEREYVALKANYEALKLNYDNLERQNESLTLQ 145
                          69**************************************************************************************99 PP

          HD-ZIP_I/II  91 lke 93 
                          +ke
  Manes.18G063800.1.p 146 IKE 148
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.68E-1949114IPR009057Homeodomain-like
PROSITE profilePS5007117.58952112IPR001356Homeobox domain
SMARTSM003892.0E-1755116IPR001356Homeobox domain
CDDcd000864.61E-1557113No hitNo description
PfamPF000466.0E-1657110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-1959118IPR009057Homeodomain-like
PRINTSPR000316.2E-68392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000316.2E-692108IPR000047Helix-turn-helix motif
PfamPF021831.0E-14112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MKRFSSSDSF AALVSISSSK EEKTQKSTQE YTREFQAMLD SLEEEGHSEE AIHATEKKRR  60
LTLEQVKALE KSFEVENKLE PEKKLKLAEE LGLQQRQVAI WFQNRRARWK TKQLEREYVA  120
LKANYEALKL NYDNLERQNE SLTLQIKELK AKLREENAES SHSVKEETPV SESENNVSVH  180
SQSHEFSDNN HSSPTIKDQS DCLPSHALMN WIQLTESRTI LGNGFQVYQP HVVKIEEQNL  240
FNTEESCNFF SVDQAPTLYW HFPEQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G063800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600535.10.0homeobox-leucine zipper protein ATHB-6-like isoform X1
TrEMBLA0A2C9U1A50.0A0A2C9U1A5_MANES; Uncharacterized protein
STRINGcassava4.1_014014m1e-159(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.14e-40homeobox protein 16