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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.18G061600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ZF-HD | ||||||||
Protein Properties | Length: 255aa MW: 27423.5 Da PI: 7.615 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.2 | 6e-31 | 54 | 109 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY+eClkNhA+s+G h+vDGCgEfm++ geegt +al CaAC+CHRnFHR+e++ Manes.18G061600.1.p 54 SVRYRECLKNHAVSIGRHTVDGCGEFMAA-GEEGTLDALICAACNCHRNFHRKETDG 109 79**************************9.999*********************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.4E-29 | 55 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-22 | 56 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.0E-28 | 56 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.977 | 57 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.45E-21 | 178 | 252 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-32 | 182 | 253 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.6E-27 | 191 | 247 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDFDEHEDQE EDMPMAASPV YDTISDSSRL KTGPAGGEGA PATATSNTRK SGSSVRYREC 60 LKNHAVSIGR HTVDGCGEFM AAGEEGTLDA LICAACNCHR NFHRKETDGA SEGIYHHHQQ 120 HAKFSPLYRA PPPAGYLHLT PAPQIRPLAL PAASAGGAGG AIIGGGYSRE EEDVSNPSSS 180 GGGGGACGSS KKRFRTKFTQ EQKDKMLDFA EKLGWRIQKH DEAAVEQFCA EYGVKRRVLK 240 VWMHNNKHTV GKKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-28 | 190 | 249 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.18G061600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021600925.1 | 0.0 | zinc-finger homeodomain protein 2-like | ||||
Swissprot | Q6YXH5 | 1e-72 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A2C9U1W9 | 0.0 | A0A2C9U1W9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_014478m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-66 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Manes.18G061600.1.p |
Publications ? help Back to Top | |||
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