PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G058300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 595aa    MW: 63447.6 Da    PI: 5.5409
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G058300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-07203247144
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                          r++W + Ed  l+ av+++G g+W+ I r      Rt+ q+  rw
  Manes.18G058300.1.p 203 RKPWLESEDMELIAAVQKYGEGNWANILRSEFkWDRTASQLSQRW 247
                          789************************986554556666666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.563198255IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-11199252IPR009057Homeodomain-like
SuperFamilySSF466897.48E-12199259IPR009057Homeodomain-like
SMARTSM007171.1E-7202253IPR001005SANT/Myb domain
PfamPF002494.3E-6203247IPR001005SANT/Myb domain
CDDcd116601.95E-12204252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MIEKSTKQKK GIVSEEDIST LLQRYTANTV LTLLQEVAQF EGVKIDWNAL VKTTTTGISN  60
AREYQMLWRH LAYRHALLEN FEHGAQPLDD DSDLEYELQA FPDVSSEAST EAAACVKVLI  120
ASGSPSDSTH PNSTTVEAPL TINIPNGQAV RATSENLQPA TMRGMNITVP VSVQKQPLPA  180
ATSTEGLDAN GSASGTIPPR RKRKPWLESE DMELIAAVQK YGEGNWANIL RSEFKWDRTA  240
SQLSQRWAII RKRRLGNWNL GGNTSGVQLT EAQRAARHAM NLALDPPVKS TFTNNSGETS  300
SSQPSSQRPF VTKSSSMGPL GSAANSQVAV NKLVKPDLNS NPVRAAAVAA GARVATQSDA  360
ASLLKAAQAK NAVHIMQASS SSIPSMPGGA SSHSEARLDV HLNDQAAASV STHPAVSTSG  420
PCVALEKAPS PTTEPTPNSN AELSSKQDAE TTEETKILSE DVTKVQVQEH QGIVLGNVPR  480
EQVQEEKAAL PNQGAELKTE VGVAQSTDVS RKVNMVDVHG NQAEGIQKSN VDKVPSLSSV  540
GKDENQSPVQ ENGDNKSTSN KQVDLPRVAT DECSEKLEAV CKAEPCNMMT DGQG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198204PRRKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G058300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601160.10.0uncharacterized protein LOC110606592 isoform X1
TrEMBLA0A2C9U1N00.0A0A2C9U1N0_MANES; Uncharacterized protein
STRINGcassava4.1_004108m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.11e-88MYB_related family protein