PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

GATA

Protein Properties

Length: 282aa MW: 30486.6 Da PI: 7.3705

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.18G056300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50.7	2.4e-16	204	240	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g+++LCnaCGl+++ +g+ Manes.18G056300.1.p 204 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANRGT 240 ***99999*********************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	1.0E-9	70	105	IPR010399	Tify domain
PROSITE profile	PS51320	14.042	70	105	IPR010399	Tify domain
Pfam	PF06200	5.2E-12	74	104	IPR010399	Tify domain
Pfam	PF06203	1.7E-15	136	178	IPR010402	CCT domain
PROSITE profile	PS51017	12.669	136	178	IPR010402	CCT domain
SuperFamily	SSF57716	2.61E-12	197	249	No hit	No description
PROSITE profile	PS50114	10.488	198	249	IPR000679	Zinc finger, GATA-type
SMART	SM00401	2.3E-16	198	251	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	8.7E-16	202	245	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.83E-15	203	249	No hit	No description
PROSITE pattern	PS00344	0	204	231	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	3.8E-14	204	240	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MYGHSHHMNV HNQIAAPAGD DEDAAAADSI DHHHIRYEDG NATGVVVGDV SSDSVYVPSN 60 GAGSELAVHR GDVSSQLTLT FRGQVYVFDA VTPDKVQAVL LLLGGCELTS GPLEIAAQNQ 120 RAAVVDFPGR CTQPQRAASL NRFRQKRKER CFDKKVRYSV RQEVALRMQR KKGQFTSSKK 180 SDGTYGWGGG QDSGQDDSQQ ETSCTHCGIS SKSTPMMRRG PSGPRSLCNA CGLFWANRGT 240 LRDLSKKTQE HSVTPIEQGE AEANDSDSGN AIHTHSNHVT Y*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.18G056300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021601748.1	0.0	GATA transcription factor 25-like
Refseq	XP_021601749.1	0.0	GATA transcription factor 25-like
Swissprot	Q9LRH6	1e-92	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A2C9U1R2	0.0	A0A2C9U1R2_MANES; Uncharacterized protein
STRING	cassava4.1_013436m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2836	33	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.3	8e-80	GATA-type zinc finger protein with TIFY domain

Link Out ? help Back to Top
Phytozome	Manes.18G056300.1.p

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]