PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G055000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 350aa    MW: 39581.6 Da    PI: 4.3577
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G055000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.7e-12183226654
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Manes.18G055000.1.p 183 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 226
                          589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.447177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-16180242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9183226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-12183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.13E-5184231No hitNo description
Gene3DG3DSA:4.10.280.106.9E-16184240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048737.49E-4275316No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MELNYQHGFL EELLALRRDT WENIPSFSTE MGELFSGGWN LDCFDHGDNP AATLPPISFH  60
EELSSPLKQD FNNYYFNEVS CPFGNEFSSP PFTDEFSAPQ FTDSSYNNLD TPPYPVQEDT  120
PMSTMEDDQE LGLLPNHTQS LEMFDTCKVE PIQSPEVPAF NIGPFPERKM RGKKLEGQPS  180
KNLMAERRRR KRLNDRLSML RSIVPKISKM DRTSILGDTI DYVKELLERI QNLQQEIEVG  240
SDQLNMVGIL KDTKASELIV RNSPKFDVER VNEATRIEIC CAAKPGLLLS TVNTLEALGL  300
EIEQCVISCF NDFAMQASCS EELEQSRLIS SEDIKQALFR SAGYGGRCM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185192ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G055000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600770.10.0transcription factor bHLH93-like
SwissprotQ9LSL15e-81BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A2C9U1J80.0A0A2C9U1J8_MANES; Uncharacterized protein
STRINGcassava4.1_011201m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.13e-83beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]