PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.18G045600.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 354aa MW: 39520.8 Da PI: 4.9253

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.18G045600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.9	2.4e-10	285	325	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Manes.18G045600.1.p 285 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 325 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.1E-14	274	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.926	275	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-12	280	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-11	281	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.51E-12	284	329	No hit	No description
Pfam	PF00010	1.4E-7	285	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
METLGAFPDE ELDFSRMFST QDQLDTIPHL LTQCSFPLEN DGGFQFTIPS AFSSNLEANL 60 NMAGVHESLF SSWSTLNNPD LNLFSQENSS SSNCSSSVLI SSSPHETYFF SDSNQLQSSN 120 DDSMSMDFYI MDEKNSGSLV PVFPQFTMSE AVCTNENMRS PKMGNLDGIQ PEANAVPAKG 180 LQKKRMFDFP GSQFNQSDKK KSRITRDVQK SNKNVKSKKN QKFTPKSNEE EERNSSSCSS 240 EEDDASQDSN RGPSSDSKVS EAQKSNGKAR TSRGSATDPQ SLYARKRRER INERLRILQN 300 LVPNGTKVDI STMLEEAVHY VKFLQLQIKL LSSDDLWMYA PIAYNGMDIS KLI*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

METLGAFPDE ELDFSRMFST QDQLDTIPHL LTQCSFPLEN DGGFQFTIPS AFSSNLEANL  60
NMAGVHESLF SSWSTLNNPD LNLFSQENSS SSNCSSSVLI SSSPHETYFF SDSNQLQSSN  120
DDSMSMDFYI MDEKNSGSLV PVFPQFTMSE AVCTNENMRS PKMGNLDGIQ PEANAVPAKG  180
LQKKRMFDFP GSQFNQSDKK KSRITRDVQK SNKNVKSKKN QKFTPKSNEE EERNSSSCSS  240
EEDDASQDSN RGPSSDSKVS EAQKSNGKAR TSRGSATDPQ SLYARKRRER INERLRILQN  300
LVPNGTKVDI STMLEEAVHY VKFLQLQIKL LSSDDLWMYA PIAYNGMDIS KLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.18G045600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257506	2e-63	KP257506.1 Salvia miltiorrhiza clone 73 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021601531.1	0.0	transcription factor bHLH84-like
Swissprot	Q84WK0	2e-54	BH085_ARATH; Transcription factor bHLH85
TrEMBL	A0A2C9U244	0.0	A0A2C9U244_MANES; Uncharacterized protein
STRING	cassava4.1_031805m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF807	33	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	9e-40	ROOT HAIR DEFECTIVE 6-LIKE 2

Link Out ? help Back to Top
Phytozome	Manes.18G045600.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701] Han H, et al. Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution. Planta, 2017. 246(5): p. 1019-1028 [PMID:28770336]