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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.18G024300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB_related | ||||||||
Protein Properties | Length: 92aa MW: 10518.8 Da PI: 8.8593 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29 | 2.5e-09 | 6 | 50 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ +l+ +a + + ++ +W+ ar +g g+t +++k ++ Manes.18G024300.1.p 6 SWTPKQNKLFENALAIYDKDtpdRWHNLARAVG-GKTVEEVKRHYE 50 7********************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.477 | 2 | 57 | IPR017884 | SANT domain |
SMART | SM00717 | 4.8E-8 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.36E-13 | 5 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.20E-6 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-4 | 6 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-6 | 6 | 50 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MASGSSWTPK QNKLFENALA IYDKDTPDRW HNLARAVGGK TVEEVKRHYE LLVEDVRQIE 60 AGQVPLPNYR KTGETYNNYA DEERRLKGLK L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-35 | 2 | 91 | 6 | 92 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.18G024300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021601829.1 | 1e-62 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 5e-36 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A2C9U001 | 3e-61 | A0A2C9U001_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_028103m | 5e-62 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 2e-38 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Manes.18G024300.1.p |