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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.18G023500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB_related | ||||||||
Protein Properties | Length: 103aa MW: 11492.9 Da PI: 9.7509 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.1 | 4.9e-09 | 16 | 59 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +l+ +a +++ ++ +W +a+ +g g++++++k ++ Manes.18G023500.1.p 16 SWTPKQNKLFEKALALYDKDtpdRWQNVAKAVG-GKSPEEVKIHY 59 7********************************.*********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.265 | 12 | 72 | IPR017884 | SANT domain |
SMART | SM00717 | 2.8E-8 | 13 | 65 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.71E-13 | 15 | 71 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.2E-4 | 16 | 61 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-7 | 16 | 59 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-6 | 17 | 63 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MASRHFSSSS HGSSSSWTPK QNKLFEKALA LYDKDTPDRW QNVAKAVGGK SPEEVKIHYD 60 RLVEDLIYIE SGQAPLPTYK ATGSNGRGID EEKRLMKNLR IQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-34 | 8 | 102 | 2 | 93 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.18G023500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021600311.1 | 4e-65 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 4e-39 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A2C9U0P7 | 3e-70 | A0A2C9U0P7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_027019m | 2e-64 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 3e-39 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Manes.18G023500.1.p |