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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.18G018200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | SRS | ||||||||
Protein Properties | Length: 315aa MW: 34605.2 Da PI: 8.3122 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 230 | 4.1e-71 | 89 | 247 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..........aeaaskrkrelkskkq 83 g+++CqdCGnqakkdCah RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++++++ + +++kr re ++ + Manes.18G018200.2.p 89 GGMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQEQQQQQhnqeqqqlqfRGENPKRLRE-NQGGA 177 789****************************************************99988887756665555544445555555.47789 PP DUF702 84 salsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 s+l++t+l++++s k le++++P+ev+s+avfrcvrvs++d+ +e++aYqtav+igGhvf+G+LydqG++ Manes.18G018200.2.p 178 SSLACTRLATTTSGKGLEVAHFPPEVNSTAVFRCVRVSAMDEPDEQYAYQTAVNIGGHVFRGVLYDQGPD 247 99******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.3E-67 | 90 | 247 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 8.9E-27 | 92 | 134 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 6.9E-26 | 198 | 246 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048467 | Biological Process | gynoecium development |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MAGWFYLSGR EGATSKQEEE KEQHNNLFLY RSNEEIYNKG FEIWPQYYQQ QQNMNSYSSF 60 GVGPSRRSFS DESSRSGFTV MRQGGIGGGG MNCQDCGNQA KKDCAHLRCR TCCKSRGFQC 120 QTHVKSTWVP AAKRRERQQQ LAALQQEQQQ QQHNQEQQQL QFRGENPKRL RENQGGASSL 180 ACTRLATTTS GKGLEVAHFP PEVNSTAVFR CVRVSAMDEP DEQYAYQTAV NIGGHVFRGV 240 LYDQGPDGRY TSGGESSSGG VQQLNLITAA TTSPAATTTN ASNPGTGALL DPSLYPAPLN 300 AFIAGTQFFP PPRS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.18G018200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP011966 | 0.0 | AP011966.1 Jatropha curcas DNA, clone: JHL18I08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021600802.1 | 0.0 | protein SHI RELATED SEQUENCE 5-like isoform X2 | ||||
Swissprot | Q9LQZ5 | 3e-98 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2C9U0K5 | 0.0 | A0A2C9U0K5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_021201m | 1e-155 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 1e-75 | SHI-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Manes.18G018200.2.p |
Publications ? help Back to Top | |||
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