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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.17G111400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NAC | ||||||||
Protein Properties | Length: 398aa MW: 44371.9 Da PI: 5.7865 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103 | 3.9e-32 | 55 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 lp+G++F+P+d el+ e+L +k+ + ++++ ++++ +i++++P++Lp +k++ ++++fF+++ ++yatg+rk+r+ Manes.17G111400.2.p 55 LPAGVKFDPSDAELL-EHLSAKCGVGDtnphafIDEFIpTLHDDkGICYTHPENLP-GAKKNGSNIHFFHRNINAYATGRRKRRKvhnqq 142 799************.99***9887775555442222222443337**********.55667889*******************756666 PP NAM 78 ...tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+k+v++ +g ++g+kk++v+y +++ k+ k++Wvmh+y+l Manes.17G111400.2.p 143 gssEEHVRWHKTGKTKSVME-NGVQKGCKKIMVLYksSKKGTKPDKSNWVMHQYHL 197 66555889************.999***********4334566777*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-36 | 40 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.489 | 55 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-14 | 56 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MARAWLIDSR TIARKVRNPT RASAYQIKDY GANRECPNCH HCIDNSDVCH DWPGLPAGVK 60 FDPSDAELLE HLSAKCGVGD TNPHAFIDEF IPTLHDDKGI CYTHPENLPG AKKNGSNIHF 120 FHRNINAYAT GRRKRRKVHN QQGSSEEHVR WHKTGKTKSV MENGVQKGCK KIMVLYKSSK 180 KGTKPDKSNW VMHQYHLGTD EDEKEGEYVV SKIFYQQQKQ HDLNDDGLGF EDSDTLALHT 240 SPRTPITNPP NPPRPKKSDI LDDVADEKEQ DIIKGASDVQ VPAVHPEDDV GYSAWLAGES 300 QAVENYDFSS IDDSLLCKEI FDSSSLFLSN SGNVSYNGSA HTRNEVTGDT TNNNNNNNAP 360 CGIADLENLE LDTPPDFQLA DLQFSSQDSI LGWIDRL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.17G111400.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR605196 | 0.0 | KR605196.1 Manihot esculenta NAC transcription factors 58 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021599047.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 3e-87 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A0M4FEU2 | 0.0 | A0A0M4FEU2_MANES; NAC transcription factors 58 | ||||
STRING | cassava4.1_025371m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 1e-102 | NAC domain containing protein 44 |
Link Out ? help Back to Top | |
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Phytozome | Manes.17G111400.2.p |