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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.17G101600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB_related | ||||||||
Protein Properties | Length: 86aa MW: 9426.44 Da PI: 9.8772 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.9 | 3.2e-10 | 13 | 57 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+e + + +a + + ++ +W+ +ar +g g+t+ ++k ++ Manes.17G101600.1.p 13 SWTAEQNKAFEKALAVYDKDtpeRWANVARAVG-GKTADDVKRHYE 57 6********************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.481 | 6 | 60 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5.1E-8 | 10 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-5 | 13 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-7 | 13 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.29E-8 | 13 | 60 | No hit | No description |
SuperFamily | SSF46689 | 9.72E-13 | 13 | 68 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MASTSMSSRG SASWTAEQNK AFEKALAVYD KDTPERWANV ARAVGGKTAD DVKRHYELLV 60 QDVRYIESGQ VPFPNYRTTG GSRRG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-39 | 1 | 82 | 1 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.17G101600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021599003.1 | 1e-57 | protein RADIALIS-like 1 | ||||
Swissprot | Q58FS3 | 7e-39 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A2C9U7J8 | 2e-56 | A0A2C9U7J8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_020375m | 4e-57 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-35 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.17G101600.1.p |
Publications ? help Back to Top | |||
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