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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Manes.17G096300.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
| Family |
B3 |
| Protein Properties |
Length: 409aa MW: 46816.3 Da PI: 8.6165 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Manes.17G096300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 44.5 | 2.7e-14 | 26 | 111 | 1 | 91 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
ffk+ +ps ++++ l++p+kf++++g + s + ++g W+v+l +k ++++++ +GW++Fv+ +++g f+vF + g s+f
Manes.17G096300.1.p 26 FFKIILPSTIHEKK-LRIPNKFVSKFGDE--LSDFANIIVPNGCAWKVRL--TKDQKGIWFDDGWQNFVDHYSINSGYFLVFGYRGFSNF 110
89999999999988.********999855..777899999**********..*******************************9776777 PP
. CS
B3 91 e 91
+
Manes.17G096300.1.p 111 S 111
4 PP
|
| 2 | B3 | 56.9 | 3.9e-18 | 315 | 398 | 8 | 97 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
+++ +++l++p +fa+++ + +k ++l+ ++g++W v l +k+ gr+ ++kGW+ F+++n+L+ g+++vF+l++++ l+v++f
Manes.17G096300.1.p 315 QYNF-NNMLYVPSRFAKTYLNR--FHKHIKLQGSDGKEWIVLL-LWKSWGRVDFGKGWNAFCRENNLQGGEVCVFELIKSDV--LKVSLF 398
4444.567***********544..6778**************9.79******************************998444..477666 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 409 aa
Download sequence Send
to blast |
MPSPSEMEPN ANRRLRWLPE RPSQHFFKII LPSTIHEKKL RIPNKFVSKF GDELSDFANI 60
IVPNGCAWKV RLTKDQKGIW FDDGWQNFVD HYSINSGYFL VFGYRGFSNF SIVILDVSAS 120
EIEYPQNDDG SIYGEKCLVH HQIEMENNNS ILDSTLPSPH SSSLKSNVCG VSETKGESGR 180
RYTPLKNRGR KKRFEAVPSM GSPYFKNIYN RRSKKIKMEE LLEIESVDAN ESGRGKFDKF 240
AISNSHGPLV ETNDSTKSEV ELGENELLAK CEEDVEIITS EMFGFKKTFP ESEKAIEAAR 300
KFKPKCPSFM VVLRQYNFNN MLYVPSRFAK TYLNRFHKHI KLQGSDGKEW IVLLLWKSWG 360
RVDFGKGWNA FCRENNLQGG EVCVFELIKS DVLKVSLFGA VQDVKPEN*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4i1k_A | 4e-19 | 288 | 398 | 28 | 140 | B3 domain-containing transcription factor VRN1 |
| 4i1k_B | 4e-19 | 288 | 398 | 28 | 140 | B3 domain-containing transcription factor VRN1 |
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