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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Manes.17G092100.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family |
C2H2 |
Protein Properties |
Length: 591aa MW: 64374.2 Da PI: 9.1354 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Manes.17G092100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 16.2 | 3.1e-05 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C+ C+k F r nL+ H r H
Manes.17G092100.1.p 71 FICEVCNKGFQREQNLQLHRRGH 93
89*******************88 PP
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2 | zf-C2H2 | 13.1 | 0.00028 | 147 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k++ +s+ k H +t+
Manes.17G092100.1.p 147 WKCEKCSKRYAVQSDWKAHSKTC 169
58*****************9998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 591 aa
Download sequence Send
to blast |
MAASSSSVPF FGIRDEDHQN QIKQQHSSTP TSSTAPPPPP QKKKRNQPGT PNPDAEVIAL 60 SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKTTKEVKRK VYLCPEPTCV 120 HHDPSRALGD LTGIKKHYSR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAQ ESARNPPSTL NTIGSHLFVG SNMSLGLSQV GTQISSMQDQ 240 SSDILRLGGG GRSGQFDHLL PPSMGSSSFR TPQQMPSSAF FMQEPNQNYH EEHQSQQGLL 300 QNKSFHNGLM QFADLHNTTN NNPPPPASNL FNFSFMSSGS TGSNIVNSND ANNSNSNIPS 360 SGLLISNPFN TQNGTTGGGE GSGIFSNNIM GDHHHQMTSG VPPLFSSSVQ NDNMVPHMSA 420 TALLQKAAQM GSTSSTNSAS LLRSFGSSSS SGIKSDRPLV AANFGGIFNE NDNNLHDLMN 480 SFATGNSSLF VSGHGQENPY SGNMEEAKLH QGMNVSIGGS DRLTRDFLGV GQIVRSMSGG 540 FSQREKHHHH HQQQQQQAPQ PGIDMSSSLD SERNITAQTS QSFGGNGNFQ *
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC208494 | 1e-167 | AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence. |