PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G060600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 405aa    MW: 46635.9 Da    PI: 4.7088
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G060600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.6e-35141052102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+ye+++d+++++++sws++++sf+v+++ efa+++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ 
  Manes.17G060600.1.p  14 FLSKTYEMVDDPSTDSVVSWSQSNKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANEDFIRGQP 94 
                          9***************************************************************9998.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +l+++i+r+k 
  Manes.17G060600.1.p  95 HLMKNIHRRKP 105
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.9E-369103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.0E-6410103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.0E-3910103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.7E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDESQGSSNS LPPFLSKTYE MVDDPSTDSV VSWSQSNKSF IVWNPPEFAR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANEDFI RGQPHLMKNI HRRKPVHSHS MQNLQGQGSY  120
TLTDPERQTL RDDIERLQRE KEVLISDLQR HEQERKGFEM QMQALKEKLQ QMERRQQTMV  180
SFVAQVLQKP GLALNLMSQL EPGHDRKRRL PRIGYFYDEA SMEENQMVTC QTRENVDSNT  240
AALSNMEQFE QLESSLTFWE SIANDVENKM QSNSNLELDE STSCAESPAI SCVQFSVDIR  300
PKSPAIDMNS EPAVASVPEP EPLKEQTTGT APTVAAGVND IFWEQFLTEN PGSTDAQEVQ  360
SERKDSGERK NEMKPSDQGK FWWNMRNVNN LAEQMEHLTP AERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-25410320129Heat shock factor protein 1
5d5v_B6e-25410320129Heat shock factor protein 1
5d5v_D6e-25410320129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G060600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599108.10.0heat stress transcription factor A-4a isoform X1
RefseqXP_021599109.10.0heat stress transcription factor A-4a isoform X1
SwissprotO494031e-145HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A2C9U5F30.0A0A2C9U5F3_MANES; Uncharacterized protein
STRINGcassava4.1_008941m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-143heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]