PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.17G055000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 28555.5 Da PI: 8.2723 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.9 | 3.2e-12 | 76 | 122 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr l+P a +K++Ka+ L ++++ +k+L Manes.17G055000.1.p 76 KSHSEAERRRRERINAHLATLRGLIPCA-----EKMDKATLLAEVINQVKEL 122 58*************************9.....8************999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.631 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.4E-10 | 76 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.03E-12 | 77 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.9E-13 | 77 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.8E-10 | 79 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.0017 | 161 | 194 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MGAYYYSSNS SSGCGYFNSL DPFSRSLDGF NGVSRGGSMV SQALVLDSEK GELVKAPATR 60 VAKKGMSEAK ALAALKSHSE AERRRRERIN AHLATLRGLI PCAEKMDKAT LLAEVINQVK 120 ELKKNAIEAS KGLLIPMDDD EVKVETHDNG AGDGTLSFKA SLCCDYRPEL LSDIRQAVDS 180 LQLKMVDAQI STLGCRLKVV TFLTCCRDKN ADEPELLTNS IHQALNFVLE KGSILPEYSP 240 RTTLQNKRRR VTFLESSSST S* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 86 | ERRRRE |
2 | 246 | 250 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.17G055000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021598395.1 | 0.0 | transcription factor bHLH30-like | ||||
TrEMBL | A0A2C9U639 | 0.0 | A0A2C9U639_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_028553m | 1e-170 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8986 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 4e-34 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.17G055000.1.p |