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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.17G051700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 281aa MW: 31615.2 Da PI: 6.7973 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1e-19 | 121 | 171 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd k +r++lg+f+tae+Aa a+++a+++++g Manes.17G051700.1.p 121 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFDTAEDAALAYDKAALRIRG 171 7********.**********3...2234*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.9E-32 | 120 | 179 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-14 | 121 | 171 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.16E-29 | 121 | 179 | No hit | No description |
PROSITE profile | PS51032 | 23.828 | 121 | 179 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-23 | 121 | 181 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.0E-38 | 121 | 185 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 122 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 145 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MENMAIQSDH YHHHLLENVW ATFINGDDGG DKRTRNTQGD PKSWEDQLPC LDGREDSMKI 60 LQRLPSLGRW MSMGAEAWEE LLAGIVPSSQ NITDSAFDYS SEKKSSKLMN NVKGERTTQR 120 HYRGVRRRPW GKYAAEIRDS SRKGARVWLG TFDTAEDAAL AYDKAALRIR GPKANLNFPF 180 ETVAKAMGVD CSSNLSSKAC NKTSENSYKF LAGSNGDNVP RHRKRVSRDW EESSTDMMRD 240 QEPALKRMAT VEESKFGNGF DVLEFQDLGS DYLDSLLSSL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-27 | 120 | 182 | 4 | 66 | ATERF1 |
3gcc_A | 1e-27 | 120 | 182 | 4 | 66 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.17G051700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021599788.1 | 0.0 | ethylene-responsive transcription factor ERF091-like | ||||
TrEMBL | A0A2C9U5D4 | 0.0 | A0A2C9U5D4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_022816m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9547 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 2e-30 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.17G051700.1.p |