PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G049300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HB-other
Protein Properties Length: 1687aa    MW: 190641 Da    PI: 6.4235
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G049300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.1e-193186257
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                          kR+  t+ qle+Le++++ + yps+++r+eL++klgL++rq ++WF+ rR k+kk
  Manes.17G049300.1.p 31 PKRQMKTPFQLEALEKAYALETYPSEAMRAELSQKLGLSDRQLQMWFCHRRLKDKK 86
                         69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-191087IPR009057Homeodomain-like
SuperFamilySSF466892.69E-171887IPR009057Homeodomain-like
PROSITE profilePS5007116.9082787IPR001356Homeobox domain
SMARTSM003893.7E-192991IPR001356Homeobox domain
PfamPF000461.3E-163186IPR001356Homeobox domain
CDDcd000863.08E-143287No hitNo description
SMARTSM005711.1E-22541600IPR018501DDT domain
PROSITE profilePS5082716.205541600IPR018501DDT domain
PfamPF027916.7E-18542597IPR018501DDT domain
PfamPF050664.4E-16722790IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.4E-8930974IPR028942WHIM1 domain
PfamPF156134.6E-1311151187IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1687 aa     Download sequence    Send to blast
METNSEGENQ NRGTSGGNNN IGNSNEGQSK PKRQMKTPFQ LEALEKAYAL ETYPSEAMRA  60
ELSQKLGLSD RQLQMWFCHR RLKDKKETPA KKPRKAVQLT ESPVEEMRAV EPDPDPDPDP  120
VSDYGSGSGS GSSPFMEPRK VYLDDVPMMR RHYESSPQSV MELRAIACVE AQLGEPLRED  180
GPILGMEFDP LPPDAFGAPI AMTEQQKRPL HSYDAKAYER HDAKSSKASA RASHEYPFIQ  240
DQSTMRSDAY GQVARSPYHD PALDILKGKA SFVHEDEPLA KVQGVRLSSQ PGKKGHVFSS  300
LHRDDDYLLQ HESFTNNRIS AHAIGHPIMG SENPDIFPDA QIFHTDTGPQ VGKKCKNDEV  360
RIAREVEAQE NQIRKELEKQ DQLKRKSEER MRKEMERHER ERRKEEERLM RERQREEERS  420
LREQKRELER REKFLQKEYL RAEKRRQKEE LRREREAVKR QAAIEKATAR RIAKESLDLI  480
EDEQLELMEL AAASKGLTSI VHLNYDTLQN LESFRDSLSL FPPESIQLKK PFAIQPWMDS  540
EEHIGNLLMV WRFFITFADV LGLWPFTLDE FVQAFHDYDS RLLGEVHFAL LKLIIKDIED  600
VARTPTGLGT NQNCAANPEG GHLQIVEGAY MWGFDIRNWQ RHLNPLTWPE IFRQLALSAG  660
FGPQLKKRSS TWKYLGDNDE VKGCEYTIST LRNGSAAENA FSLMRERGLL LPRRSRHRLT  720
PGTVKFAAFH VLSLEGSKGL TVLELADKIQ KSGLRDLTTS KTPEASISVA LTRDQKLFER  780
IAPSTYCLRA AYRKDPADAE AILSAARKKI RIFENGFLGG EDGDDVERDE DSEGDVDEDP  840
EVDDLTTPLS ANRSGDHAID ANTCSGSRKD NICNGIPLTA QNDPVKEPSS IHLNGPKDAK  900
TPSSTVQCVP REDVVVRNVD QENIEIDESK SGESWIQGLA EGEYAHLSVE ERLNALVALV  960
GIANEGNTIR AVLEDRLEAA NALKKQMWAE AQLDRSRLKE DILSKLDFPT YIGGKAEMQV  1020
TGSVVEGGQS PLLLDDSKNK EASPRIAEDQ KLFPASGNVQ SNYNSGPTEK ALMVQDLSMN  1080
PDNFSSQQHG YASKRLRSQL KAYIGHIAEE TYVYRSLPLG QDRRRNRYWQ FVASASKNDP  1140
CSGRIFVELH DCNWRLIDSE EAFDALLSSL DTRGIRESHL RIMLQKIEKS FKQNVRRNFT  1200
SKNIVCQNGI AAENEAGEAD SSPNCSAGIS SPSSMVCGSN SDTLDTSSLF KIELGRNEME  1260
KKGAMKRYQD FQKWTWKECF NSLTLHAMKY GKKRCSELLT TCDWCFDSYL AEDPDSVSCH  1320
QTLNAANKSS NFSEHVIQCK VKRKLEPGVC DTSLPLGIRL LKALLAFIEV SVPPEALESF  1380
WMEIHRKTWA TKLNMSSSPE ELLQILTVLE NATKRDFLSA NFEMTKELLG TSISTESALF  1440
GSTDLGPLPV LPWIPKTTAA VALRLFELDG SITYIQHEKA EPSEDKSAKV HLKLPARYSP  1500
FKNKEIELKG PRQYEHVNEE RLTDLHSKRN SQKRRRGGRD QGYGTKWPRR VPGLKSDSNR  1560
RNARENEKFN IGSKQGRRAN AKGSGRGLRT VRRRRTEMMV AEEPVIGRMS NTVGPSSYGG  1620
SLRNLGEENW GVEKVRMDVD DADNSNSVEA EESDDNVEAE GYEQGNWEQS FNRASNRWNR  1680
TVMEMT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17986RRLKDKKE
2444460RRQKEELRREREAVKRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G049300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599156.10.0homeobox-DDT domain protein RLT1 isoform X1
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A2C9U6R40.0A0A2C9U6R4_MANES; Uncharacterized protein
STRINGcassava4.1_000118m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1