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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.17G048400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 27075.6 Da PI: 10.0419 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.9 | 1.4e-19 | 28 | 78 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +gr++AeIrdp + r++lg+f+taeeAa+a++ a+++++g+ Manes.17G048400.1.p 28 HFRGVRKRP-WGRYAAEIRDPI----KkSRVWLGTFDTAEEAARAYDTAAREFRGA 78 69*******.**********72....35*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.8E-39 | 28 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-12 | 28 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-32 | 28 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.894 | 28 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.51E-31 | 28 | 85 | No hit | No description |
SuperFamily | SSF54171 | 1.57E-22 | 28 | 86 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.2E-11 | 29 | 40 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-11 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MAPRDKRAAV KPNGNCDAAA ASGAKGVHFR GVRKRPWGRY AAEIRDPIKK SRVWLGTFDT 60 AEEAARAYDT AAREFRGAKA KTNFPMESKN VNEIIIVDKK KDAGANKHSP SPSSTVESSS 120 RETPALMMES SSALDLNLDP FNAVRFPFQP VPTVGGAFAA TVMKHQNLLY FDAMVKSQYQ 180 RLLFDHQQKH LLRQAMSTAG NGYGSGGVGG VHSDSDSSSV VDLNLNEINP PRKSLDFDLN 240 LPPKPEFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 24 | 86 | 1 | 64 | ATERF1 |
3gcc_A | 1e-22 | 24 | 86 | 1 | 64 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.17G048400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021598578.1 | 0.0 | ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A2C9U5W1 | 0.0 | A0A2C9U5W1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_014721m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 2e-25 | ERF domain protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Manes.17G048400.1.p |