PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G040900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 476aa    MW: 52902.1 Da    PI: 10.5073
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G040900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.2e-07941336
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36
                         rW t+E++ll  av ++G+++W+++a+++   R+
  Manes.17G040900.1.p  9 RWGTWEELLLGGAVLRHGTRDWDLVAAELR-ARS 41
                         9***************************99.554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001670.0045956No hitNo description
PfamPF002498.7E-6956IPR001005SANT/Myb domain
SMARTSM002971.6E-11262372IPR001487Bromodomain
Gene3DG3DSA:1.20.920.105.1E-14274373IPR001487Bromodomain
SuperFamilySSF473701.57E-16274373IPR001487Bromodomain
PfamPF004391.0E-10276356IPR001487Bromodomain
PROSITE profilePS500148.938283353IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MSTEVVASRW GTWEELLLGG AVLRHGTRDW DLVAAELRAR SICPYTFTPE VCKAKYEDLQ  60
QRFSGSKALF EELRKQRMAE LRRALEVSED SIGSLESKLE FLKAEGINDS NVGYDSSQTE  120
SLVPFQKSDG VESSSKETSK DGLSAGSFTQ ETRTNWSPEC QVPASASVED VETKPEVPLS  180
PKQEKVSNIA TLAEAFCMGQ GGSIRRRRGK RKRKSCSKDV KEGSVGESDF WGSTDVLSVA  240
RCKENSTSSS GQTGRGFEID DKSRDLSKDG VAPNLMEIFN SIAENKCASV FRRRLDSQKR  300
GRYKKMILQH MDFDTLRSRI ANGSVTSVKE VYRYLLLLAN NALVFYSKTT REYKSALLLR  360
DIVMKSLRQH LKDYISKSTI TLLSTTQSML HLPGKPRSAR PVNRKQLGKV SKSGNTIAKT  420
PNTVKKPSDV QSLPSAESVT MTKKGSGRPR KAGRRSTMQS PERSPPKGRK RTRAR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205211RRRGKRK
2467473GRKRTRA
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G040900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599833.10.0uncharacterized protein LOC110605525 isoform X1
TrEMBLA0A2C9U4S90.0A0A2C9U4S9_MANES; Uncharacterized protein
STRINGcassava4.1_006787m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63041723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.12e-20DNA-binding bromodomain-containing protein