PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.17G031100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 476aa MW: 52246.2 Da PI: 6.5108

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.17G031100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.3e-05	367	404	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Manes.17G031100.1.p 367 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 404 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.915	355	404	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.13E-5	365	408	No hit	No description
SuperFamily	SSF47459	1.31E-11	365	419	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.5E-9	369	412	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MAEEFQTGIC GGNWWSLSKS VFMGGGGSSP CSTGINATDM GNYGSWMVTD VVDMKSRSCK 60 LHNINTANSL SPDASLLLPD SQKPHHTDSD SAATSIFMDS TLQMMGFGIS SSSSSSSSDW 120 TQTLLRRNGR AESYNSILQE EMNSSQVQKD WSSPKNFTGT GEDSSINAFK EINQDFSLEQ 180 QRLNSPMNTS ENATATTCQG LSTGFSMGSP SYGYPSTLIQ SLFDPDPQPQ QSLFNNRTIN 240 YSSPPNYGTI LNELSPCWPK LAPFLKPSLP KQQQQPACGG LHFSNNTPFW NASATALNDI 300 RPSFLPSPQP QFLVPTFDEK PNCFNLTTKT NNEEVRDSGS FVKKGSEPAF KRPRIETPTP 360 LPTFKVRKEK LGDRITALQQ LVSPFGKTDT ASVLHEAIEY IKFLHDQVNV LSTPYLKNGN 420 RQHHKVGEKL KDEEGSLKQD LKSRGLCLVP ISSTFPVSNE TTADFWTPTF GGTFR*

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MAEEFQTGIC GGNWWSLSKS VFMGGGGSSP CSTGINATDM GNYGSWMVTD VVDMKSRSCK  60
LHNINTANSL SPDASLLLPD SQKPHHTDSD SAATSIFMDS TLQMMGFGIS SSSSSSSSDW  120
TQTLLRRNGR AESYNSILQE EMNSSQVQKD WSSPKNFTGT GEDSSINAFK EINQDFSLEQ  180
QRLNSPMNTS ENATATTCQG LSTGFSMGSP SYGYPSTLIQ SLFDPDPQPQ QSLFNNRTIN  240
YSSPPNYGTI LNELSPCWPK LAPFLKPSLP KQQQQPACGG LHFSNNTPFW NASATALNDI  300
RPSFLPSPQP QFLVPTFDEK PNCFNLTTKT NNEEVRDSGS FVKKGSEPAF KRPRIETPTP  360
LPTFKVRKEK LGDRITALQQ LVSPFGKTDT ASVLHEAIEY IKFLHDQVNV LSTPYLKNGN  420
RQHHKVGEKL KDEEGSLKQD LKSRGLCLVP ISSTFPVSNE TTADFWTPTF GGTFR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.17G031100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021598586.1	0.0	transcription factor bHLH112-like
TrEMBL	A0A2C9U4H3	0.0	A0A2C9U4H3_MANES; Uncharacterized protein
STRING	cassava4.1_006806m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	9e-69	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.17G031100.1.p