PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.17G030700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 235aa MW: 26400.6 Da PI: 8.6562 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.2 | 1.9e-10 | 65 | 110 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +ErrRR+++ +++ Lr+l+P + ++Ka+i A+ YIk+Lq Manes.17G030700.1.p 65 NLHAERRRRQKLGDSLLALRSLVPII-----TNMNKAAIIVDAITYIKELQ 110 5579*********************6.....58*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.26E-10 | 59 | 114 | No hit | No description |
SuperFamily | SSF47459 | 5.76E-15 | 60 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.132 | 60 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-13 | 64 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.4E-8 | 64 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-10 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MTSFFITIHY WKHLFITNLD QSSPISELAG SAISELNNTR ESSRMVRLGL RTVDKDDCGE 60 YKSKNLHAER RRRQKLGDSL LALRSLVPII TNMNKAAIIV DAITYIKELQ QNVKLLSDQL 120 LEREASSEEA VLKTRSNEMN AAADEMKQFG IVEDVQVIKI YGNKLWIKII LEKKRRKITK 180 LIETVTSLGL ELIDINVSTS KGAMLVSSCV EDSYGGTRTV EQTKELLLEI IGSI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 176 | KKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.17G030700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021599915.1 | 1e-169 | transcription factor DYT1-like | ||||
TrEMBL | A0A2C9U599 | 1e-168 | A0A2C9U599_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_029875m | 1e-150 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5510 | 29 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21330.1 | 2e-38 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.17G030700.1.p |