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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.17G030100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | GeBP | ||||||||
Protein Properties | Length: 416aa MW: 46086.2 Da PI: 5.2748 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 117.7 | 6.4e-37 | 185 | 281 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 lfqrlwse+Dei++L G+idf++k+g++p +d++ f +f+k+s++f+vs sql +K+ rLKkKf+k+v+k k g++++fsk+hdqk+f+l Manes.17G030100.1.p 185 LFQRLWSEDDEIAVLEGIIDFTEKKGVDPAKDMNSFLDFIKSSLHFDVSLSQLKDKVWRLKKKFEKHVSKGKMGEDKTFSKAHDQKTFDL 274 79**************************************************************************************** PP DUF573 92 skkiWgs 98 skkiWgs Manes.17G030100.1.p 275 SKKIWGS 281 *****95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.2E-34 | 186 | 280 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MAPKRSIPLE DPPPASSSSE EESSSGEEEE EEEDGDDGAE AKVEGSSTEE DEANEKQQKP 60 SSQLPQNQTS KPVPEKSHFT TQQAGPESDS DGSETETDSD DDLPNRALGT TVKPIASKLI 120 EENPLKTTKH RSKSLASTQV AVKSTAAVKR GGETDRDPKD SKRSKKKDSE SDGGVEKPDD 180 IKKQLFQRLW SEDDEIAVLE GIIDFTEKKG VDPAKDMNSF LDFIKSSLHF DVSLSQLKDK 240 VWRLKKKFEK HVSKGKMGED KTFSKAHDQK TFDLSKKIWG SEASSGGGVD LVLKSNGKGR 300 KNGNNSQKGK SLTALKAELG ADIEKENEKV DKMEVEMQSH SGKKHILQFD KRVCVAGTED 360 YVVHRGLDML EGPAKKPEME EKWRKLHVAE LELFLKRNEL IREQAKLMLA SYKTE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.17G030100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021598285.1 | 0.0 | probable transcription factor At1g11510 | ||||
TrEMBL | A0A2C9U4G7 | 0.0 | A0A2C9U4G7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_009769m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25210.1 | 4e-30 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Manes.17G030100.1.p |