PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G129500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 459aa    MW: 49780.5 Da    PI: 8.6187
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G129500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.54.7e-27120177259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK+vk+s+ +rsYYrC+ ++C++kkkv+r+++  ++++i+Y g+Hnh+
  Manes.16G129500.1.p 120 SDGYSWRKYGQKQVKSSNSSRSYYRCARSNCHAKKKVQRCDHSRRIIDIIYIGHHNHD 177
                          7********************************************************7 PP
2WRKY94.57.5e-30321378259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK+vkg+ + rsYYrCtsagCp++k+ver+++d ++++  Yeg+H+h+
  Manes.16G129500.1.p 321 SDGYRWRKYGQKMVKGNSYLRSYYRCTSAGCPARKHVERATDDATTTTLAYEGKHDHD 378
                          7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-26107178IPR003657WRKY domain
SuperFamilySSF1182901.57E-24113178IPR003657WRKY domain
PROSITE profilePS5081121.7114179IPR003657WRKY domain
SMARTSM007749.8E-29119178IPR003657WRKY domain
PfamPF031063.8E-22121177IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.0E-31305380IPR003657WRKY domain
PROSITE profilePS5081130.986315380IPR003657WRKY domain
SuperFamilySSF1182901.57E-25316380IPR003657WRKY domain
SMARTSM007744.4E-33320379IPR003657WRKY domain
PfamPF031065.5E-24322377IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MADSEGKRES CALYSNASVC DPPSFSKLLK RVLSNNSSAF RSQISPQENV VSKKPIVDGA  60
KLELQAECAN DSNNVSPLAP PATTMQHSTP AIPTSGLILD QQKAEHNASL SHIVTETPAS  120
DGYSWRKYGQ KQVKSSNSSR SYYRCARSNC HAKKKVQRCD HSRRIIDIIY IGHHNHDISQ  180
SKCNVSSGSV PSANIASGHH IVDSIQIVAG ADVSICWEDI RQSSVHIADS EQQSSSSSSG  240
DIRIKVEKQN GNELDTKKFS VSSGAEQQKN SSCVIADAEV QEKHGAEPRL KKRSAYSAPL  300
LEANKETKIV VHAAADGGIS SDGYRWRKYG QKMVKGNSYL RSYYRCTSAG CPARKHVERA  360
TDDATTTTLA YEGKHDHDVP VPKKQKGSES LGRISSNATV NGPQCQKTKS LSSERISAKC  420
SVDREGDLMD EKVLELGGEK ALESAQTLLS IGFELRPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-26106380174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G129500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021597465.10.0WRKY transcription factor WRKY24-like
TrEMBLA0A2C9UCC10.0A0A2C9UCC1_MANES; Uncharacterized protein
STRINGcassava4.1_027662m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16159610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.15e-66WRKY DNA-binding protein 32