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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.16G128900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | WRKY | ||||||||
Protein Properties | Length: 318aa MW: 35222.8 Da PI: 8.4428 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.1 | 9.9e-30 | 159 | 217 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv++saedp++++ tYegeHnh Manes.16G128900.1.p 159 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQKSAEDPSILVATYEGEHNH 217 58***************************99**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 25.109 | 154 | 217 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.6E-28 | 156 | 217 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-24 | 157 | 217 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-33 | 159 | 219 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.2E-24 | 160 | 217 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MDSTLVNTSL HLNINPFFKN VQESIPKKES EQGKFVDGFE TKLNVKEETT SFLVEELTRI 60 STENKKLTEM LTVLCENYNA LQNHLVDLMS NNSQKELASS KKRKAESQDY INMIGINNGT 120 TESSSSDELD STTKPKESIQ TKISRVLFRT DPSDSSLVVK DGYQWRKYGQ KVTRDNPSPR 180 AYFKCSFAPS CPVKKKVQKS AEDPSILVAT YEGEHNHLHL SKPQFSLGSS QHSSSIAGPV 240 PTASPATTVI LDLMKPGMLQ ENAKKAVKET EAQDVGQILV QQMASSLTRD PNFTAALAAA 300 FSGRSLINQT RIEKWLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-20 | 158 | 217 | 13 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.16G128900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021596529.1 | 0.0 | probable WRKY transcription factor 60 | ||||
TrEMBL | A0A2C9UC97 | 0.0 | A0A2C9UC97_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_033249m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.1 | 1e-74 | WRKY DNA-binding protein 18 |
Link Out ? help Back to Top | |
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Phytozome | Manes.16G128900.1.p |