PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G102600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 300aa    MW: 33672.8 Da    PI: 8.9219
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G102600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.4e-19169202134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Manes.16G102600.1.p 169 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 202
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.65E-13162203No hitNo description
SMARTSM004012.9E-19163214IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.532163199IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-15167202IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.34E-12168196No hitNo description
PfamPF003204.6E-17169202IPR000679Zinc finger, GATA-type
PROSITE patternPS003440169194IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MTPVYHSSFS PFLIDLNEDQ QHNQFFCSKS TEEASSSSSL SYPVLINPSQ EDAGFYHGEF  60
HQPLIRHQEQ AGGSWDHPQL KNENENGFKF SVCKEEDRNE DQRENSSVKW MSSKMRLMRK  120
MMSSDQIVSS TPETSMTKFE DEKAGSSPSQ DDNRSQNFSS NSNNTIRVCA DCNTTKTPLW  180
RSGPRGPKSL CNACGIRQRK ARRAMAAAQA SANGTIFGPE IAAMKTKVQT KERKPSNSHL  240
PFKKRCKFTA QVRGRKKLCF EDLSIILSKN SAFHQQVFPQ DEKEAAILLM ALSYGLVHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G102600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596550.10.0putative GATA transcription factor 22
TrEMBLA0A2C9UAC20.0A0A2C9UAC2_MANES; Uncharacterized protein
STRINGcassava4.1_011296m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.16e-33cytokinin-responsive gata factor 1