PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G099700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 282aa    MW: 30598.7 Da    PI: 9.7156
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G099700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.74.9e-12555146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                         +++WT eE+e l+ +v+++G+g Wk I +          R+  ++k++w++
  Manes.16G099700.1.p  5 KQKWTSEEEEALKAGVAKHGTGKWKNIQKDPEfnpflFARSNIDLKDKWRN 55
                         79****************************99999*9779*********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.61161IPR017930Myb domain
SuperFamilySSF466896.89E-16258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-14456IPR009057Homeodomain-like
SMARTSM007173.7E-8459IPR001005SANT/Myb domain
PfamPF002494.3E-9556IPR001005SANT/Myb domain
CDDcd116605.82E-21657No hitNo description
SuperFamilySSF467854.08E-15117199IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005269.1E-14117182IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150422.489119187IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.106.1E-14120192IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.0E-10121180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALKAGV AKHGTGKWKN IQKDPEFNPF LFARSNIDLK DKWRNMNASA  60
GGQCQREKSR TAKPKAISDD PASAASSIPS SNLQTTSTAP IKADLIVDDS STSIVDGKGA  120
PKYNAMIFEA ISALNSQPGV DTSAIVSYIE QRQEVPQNFR RQLSARLRRL VAQEKLEKVQ  180
NFYKIKNSSP SGTKIPTPKQ KSIQPRPLHS VGCINSGGTM EEAAVAAAYR IAEAENKSFV  240
AAEAVKEAER VSKMAEDTDS LLQLAKEIFE KCSQGGIVLM A*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G099700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596950.10.0telomere repeat-binding factor 4-like
SwissprotF4IEY44e-76TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLA0A2C9UBC50.0A0A2C9UBC5_MANES; Uncharacterized protein
STRINGcassava4.1_013424m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.29e-64MYB_related family protein
Publications ? help Back to Top
  1. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]