PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G094300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 470aa    MW: 53187.2 Da    PI: 6.8499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G094300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.2e-13298344354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h e+Er+RR+r+N++f  Lr+++P+       K++Ka+ L  Av YIk+L
  Manes.16G094300.1.p 298 MNHVEAERQRRERLNHRFYALRSVVPNV-----SKMDKASLLADAVTYIKEL 344
                          5899***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.7E-4825205IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.4E-18294361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.765295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-14298348No hitNo description
Gene3DG3DSA:4.10.280.104.0E-17299363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-11299344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-17301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MEEITSPSSS SSLMSFCQDS SPTIQQRLQF ILQSRPEWWV YAIFWQASND PTGRLVLSWG  60
DGHFRGAEEF AAKACSKQNQ PKFRFNLGRK MTNKESQTLF SDNMEMDRLA DVDVIDFEWF  120
YTVSVTRSFA VEDGILGRTF GSGAFIWLTG NHELQMYECE RIKEARMLGI QTLVCISTTY  180
GVVELGSSNV IYKDWSLVQL CKSLFGGDTT CLLSKDPSHG SQLQIPNTCF PDIPMFSPYQ  240
KETSIEKQNE HDRKKDVTAQ GASSDSAHSD SDGNFVAGNT DRFRKRGRKQ LNGKEMPMNH  300
VEAERQRRER LNHRFYALRS VVPNVSKMDK ASLLADAVTY IKELKAKVDE SESKLRAVSK  360
KYKSANVTDD QNPDSMADNM RYPSSYKGKT MELDVKIVGT EAMIRFLSPD VNHPAVRLMD  420
VLREAEFKVH HASMSSIREL VLLDVVARVP EGLTDEEVVR SAILQRMLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-30182053192Transcription factor MYC3
4rqw_B6e-30182053192Transcription factor MYC3
4rs9_A6e-30182053192Transcription factor MYC3
4yz6_A6e-30182053192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304309RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G094300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU4343040.0GU434304.1 Hevea brasiliensis LMYC1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596925.10.0transcription factor MYC2-like
TrEMBLA0A2C9UA850.0A0A2C9UA85_MANES; Uncharacterized protein
STRINGcassava4.1_028461m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-65bHLH family protein