PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G091200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARF
Protein Properties Length: 1113aa    MW: 124036 Da    PI: 6.4062
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G091200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.21.3e-22126227199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F  
  Manes.16G091200.1.p 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHENAWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI- 213
                          99*****************************9545444.38************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           ++++ +l+++++r+
  Manes.16G091200.1.p 214 -RDEKSQLLLGIRRA 227
                          .45677789999997 PP
2Auxin_resp1255e-41252334183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+++s+F+v+YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s  rr++Gt++g+sd+dpvrW++S+Wr+L+
  Manes.16G091200.1.p 252 AAHAAANNSPFTVFYNPRASPSEFVIPFSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDPVRWKGSQWRNLQ 334
                          79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.62E-44116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-42118241IPR015300DNA-binding pseudobarrel domain
CDDcd100172.31E-19125226No hitNo description
PROSITE profilePS5086312.167126228IPR003340B3 DNA binding domain
SMARTSM010195.0E-23126228IPR003340B3 DNA binding domain
PfamPF023621.1E-20126227IPR003340B3 DNA binding domain
PfamPF065072.8E-36252334IPR010525Auxin response factor
PfamPF023092.1E-99831071IPR033389AUX/IAA domain
PROSITE profilePS5174526.1929851078IPR000270PB1 domain
SuperFamilySSF542779.32E-910011063No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1113 aa     Download sequence    Send to blast
MKVPPNGFMA NSAEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
MDFIPSYPNL PSKLICMLHN VTLHADAETD EVYAQMTLQP VNKYDKEALL ASDMGLKQNR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVARD LHENAWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPFS KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDM DPVRWKGSQW RNLQVGWDES TAGERPSRVS VWEIEPVVTP  360
FYICPPPFFR PKFPKQPGMP DDESDTENAF KRAMPWLGDE FGMKDTPSSI FPGLSLVQWM  420
SMQQNNQLSA AQAGFFPPML PSTALHNNFS VDDPSKLLNF QAPGLSVPSL QFNKANPQNQ  480
VSQLPQQSAW TQQQQLQQLL QTNITQQQPS LPQQEQQQSH PQQQQQRQQP QPQPQQQQQL  540
SQQQQPQPQP PQLQVQQQQQ MFQPPVNNGV VTPNQISNQN SQQQIVYSQL QQQQQLLAST  600
SQSQNISGAN KSPYQLTSLP QDTSFQQQME QQSNLLQRHQ QQTQLQQSPL QLLQQNLAQI  660
TQQQSQPQPQ VQQLSHPGLS EQQLHLQLLQ KLQQQQQQQL LSPTSSSLQP QLLQQQQTHQ  720
QNQQFQQSPL SQSQQQPLGN NSFSTAALMQ SQSFPVSQSH GLQKSPTTIR AHSTLTDGDA  780
PSCSTSPSTN NCQISPSNFL NRNQQTAAIL MGDPVAEPAN TLVQELNSKS DIRIKHEFPS  840
SKGTDQLKYK GTMADQLEAS SSGTSYCLDA GNIQPNFSLP TFGLDGDVQS HPRNSLPFAT  900
NIDSLAPDTL LSRGYDSQKD LQNLLTNYGG TPRDIETELS TAALSSQSFG VPNIPFKPGC  960
SNDVPINDSG VLNGGLWASQ TQRMRTYTKV QKRGSVGRSI DVTRYKGYDE LRHDLARMFG  1020
IEGQLEDPQS SDWKLVYVDH ENDILLVGDD PWEEFVSCVQ SIKILSSVEV QQMSLDGDLG  1080
SVPVPKQACS GTNSGNAWRG HYDDNSAASF NR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1741535545388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G091200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596434.10.0auxin response factor 19-like isoform X1
TrEMBLA0A2C9UBW50.0A0A2C9UBW5_MANES; Auxin response factor
STRINGcassava4.1_000609m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19