PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G076800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 293aa    MW: 32130.2 Da    PI: 6.0882
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G076800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-151462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++eEd  l+++ + +G+g +W + +++ g++R++k+c++rw++yl
  Manes.16G076800.1.p 14 RGPWSPEEDATLKRYLETYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                         89*********************************************97 PP
2Myb_DNA-binding49.11.3e-1569111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g +T+eEd+++  +  q+G++ W++Ia++++ gRt++++k++w++
  Manes.16G076800.1.p  69 GGFTEEEDKIIFTLYSQMGSR-WSLIASHLP-GRTDNDVKNYWNT 111
                          569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.912962IPR017930Myb domain
SuperFamilySSF466892.31E-2811109IPR009057Homeodomain-like
SMARTSM007179.2E-121364IPR001005SANT/Myb domain
PfamPF002491.4E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-241569IPR009057Homeodomain-like
CDDcd001676.75E-91662No hitNo description
PROSITE profilePS5129423.51263117IPR017930Myb domain
SMARTSM007171.5E-1567115IPR001005SANT/Myb domain
PfamPF002496.9E-1469111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-2570117IPR009057Homeodomain-like
CDDcd001671.54E-1271111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKRYLE TYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDKIIF TLYSQMGSRW SLIASHLPGR TDNDVKNYWN TKLKKKLLLG  120
GNPSLAIKNN TEIITPADHN YNATTAPSAT SSLPNVIPRT ETTCSFTFWD SLTHSSVTLP  180
ILSDVVYDQH LLDPSQILSL DPVDQFSFTP GIMDNLSELG SNLINNHNIV SSSQEGSSIS  240
DSSSIVMDHN LSMPAGILMD SGFGFPYDPV TALLFEDKAG EVASSGYAEI KH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G076800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021597019.10.0transcription factor MYB36-like
TrEMBLA0A2C9UBI00.0A0A2C9UBI0_MANES; Uncharacterized protein
STRINGcassava4.1_030900m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-69myb domain protein 36