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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.16G075800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 265aa MW: 28999.1 Da PI: 4.8867 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.8e-19 | 70 | 120 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Manes.16G075800.1.p 70 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 120 68*****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.2E-13 | 70 | 120 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.42 | 71 | 128 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-37 | 71 | 134 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-32 | 71 | 129 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 71 | 129 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.8E-10 | 72 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.18E-32 | 72 | 130 | No hit | No description |
PRINTS | PR00367 | 2.8E-10 | 94 | 110 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MTNHTQNSET ESSSNSSLSS SSSSSPPSPS SSSNPNSDPV PSKLQRKLEL QDPQSPSKKI 60 KRLRDSNKHP VYRGVRMRNW GKWVSEIREP RKKSRIWLGT FPTPEMAARA HDVAALSIKG 120 NSAILNFPEL ANSLPRPASL APRDVQAAAA KAAQMDTFDQ KFDSKTSSSM SSASTTSLSS 180 LVSAIDLSTE SEEELSEIVK LPSLETSYES SELRSDFLFD DSVDEWVYPP PWLQSAEDCY 240 VGGCLFDELT PNIGSFGQGL LWDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-19 | 69 | 132 | 12 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.16G075800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021596544.1 | 0.0 | dehydration-responsive element-binding protein 3-like | ||||
Swissprot | Q9LYD3 | 2e-79 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A2C9U9P5 | 0.0 | A0A2C9U9P5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_028782m | 1e-160 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 3e-70 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.16G075800.1.p |
Publications ? help Back to Top | |||
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