PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.16G074600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 840aa MW: 92190.7 Da PI: 6.3311 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.1e-19 | 21 | 79 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Manes.16G074600.1.p 21 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 79 5679*****************************************************97 PP | |||||||
2 | START | 181.4 | 5.1e-57 | 165 | 373 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++l+++ +g g Manes.16G074600.1.p 165 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNALPTGngG 253 7899******************************************************.8888888888********************* PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 +++l +++l+a+++l+p Rdf+ +Ry+ l++g++v++++S++++q+ p+ ++++vRae+lpSg+li+p+++g+s +++v+hvdl+ + Manes.16G074600.1.p 254 TIELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppTQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLEPW 343 ************************************************99999************************************* PP XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 176 lphwllrslvksglaegaktwvatlqrqce 205 +++++lr+l++s + ++k+++a+l+++++ Manes.16G074600.1.p 344 SVPEVLRPLYESPTLLAQKNTMAALRHLRQ 373 *************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.726 | 16 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.2E-16 | 18 | 84 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-17 | 20 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.99E-17 | 21 | 81 | No hit | No description |
Pfam | PF00046 | 2.2E-16 | 22 | 79 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-18 | 23 | 79 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.15E-6 | 73 | 112 | No hit | No description |
PROSITE profile | PS50848 | 25.853 | 155 | 355 | IPR002913 | START domain |
CDD | cd08875 | 1.37E-80 | 159 | 374 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.3E-23 | 164 | 370 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 7.42E-39 | 164 | 376 | No hit | No description |
SMART | SM00234 | 7.5E-44 | 164 | 374 | IPR002913 | START domain |
Pfam | PF01852 | 2.4E-54 | 165 | 373 | IPR002913 | START domain |
Pfam | PF08670 | 1.8E-51 | 698 | 838 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 840 aa Download sequence Send to blast |
MMAVTSSCKD GGSKIAMDNG KYVRYTPEQV EALERLYHDC PKPSSMRRQQ LIRECPILSN 60 IEPKQIKVWF QNRRCREKQR KEASRLQAVN RKLTAMNKLL MEENDRLQKQ VSQLVYENSY 120 FRQQTNATNL ATTDTSCESV VTSGQHHLTP QRPPRDASPA GLLSIAEETL AEFLSKATGT 180 AVEWVQMPGM KPGPDSIGIV AISHGCPGVA ARACGLVGLE PTRVAEILKD RPSWFRDCRA 240 VDVLNALPTG NGGTIELLYM QLYAPTTLAP ARDFWLLRYT SVLEDGSLVV CERSLNNTQN 300 GPSMPPTQHF VRAEMLPSGY LIRPCEGGGS IIHIVDHVDL EPWSVPEVLR PLYESPTLLA 360 QKNTMAALRH LRQISQEVSQ PNGSGWGRRP AALRALSQRL SKGFNEAVNG FTDDGWSMLE 420 SDGIDDVTVL VNSSPGKMMG LNISYANGFP SMSNGVLCAK ASMLLQNVPP AILLRFLREH 480 RSEWADSGID AYAAAAVKAG PCTLPVSRVG NFGGQVILPL AHTIEHEEFM EVIKLENMGY 540 REDMLMPGDI FLLQLCSGVD ENAVGTCAEL IFAPIDASFS DDAPIIPSGF RIIPLDSRMD 600 ATSPNRTLDL TSALDVGPTG NKASGDLSGN CGSTKSVMTI AFQFAFELHL QENVASMARQ 660 YVRSVIASVQ RVALALSPSH FGSHAGLRPP PGTPEAHTLA RWVCQSYRIY LGVELLKSEG 720 SESILKSLWH HTDAVMCCSL KALPVFTFAN QAGLDMLETT LVALQDITLE KIFDDNGRKT 780 LCSEFPQIMQ QGFMCLQGGI CLSSMGRPVS YERAVAWKVL NEEETAHCIC FMFINWSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.16G074600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY919623 | 0.0 | AY919623.1 Populus trichocarpa class III HD-Zip protein 8 (HB8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021597909.1 | 0.0 | homeobox-leucine zipper protein ATHB-15-like | ||||
Refseq | XP_021597910.1 | 0.0 | homeobox-leucine zipper protein ATHB-15-like | ||||
Refseq | XP_021597912.1 | 0.0 | homeobox-leucine zipper protein ATHB-15-like | ||||
Swissprot | Q9ZU11 | 0.0 | ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | A0A2C9UAL8 | 0.0 | A0A2C9UAL8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_001673m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1946 | 33 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.16G074600.1.p |
Publications ? help Back to Top | |||
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