PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G062000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family FAR1
Protein Properties Length: 386aa    MW: 44671.1 Da    PI: 7.6729
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G062000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.91.9e-09139215390
                 FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          Y  YAk+  Fsv+k+   k   ++    +tf C k  k++ + +          ++r+ C a+l   ++++g  +v+kle++HnHel 
  Manes.16G062000.1.p 139 YLCYAKKKCFSVSKKFVAKG-ADNMHEYQTFSCDKRRKSNAKWS----------SKRITCPARLSAILRSNGMRQVIKLETNHNHELD 215
                          889************99998.55558999****99888777654..........59******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-5139216IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGSRMGDVIC GHSHSSSGDD DNTRYEYELR RSSNGNCNHS NSVGRVDDWI LHRSNDVHQD  60
ENNRQINGRL NDVFLELFEE SEDGNEDELS TKEMVQEIEQ SHKDGVLHVS KDGHRLGYAN  120
ENDNHVFINA SIDLLFESYL CYAKKKCFSV SKKFVAKGAD NMHEYQTFSC DKRRKSNAKW  180
SSKRITCPAR LSAILRSNGM RQVIKLETNH NHELDPNMSR FMHAHRSLSG GIKRKLEAHD  240
IVGIRTSKSV RLLQVQIGRS EQLSCLPKDC RNFIDKTRRL RLENRVHSRN VEAYEEFFDV  300
VSVDKIYLVN RYKMPFISVV GVNYHGQSIL LDSIFISLYE KLKGVEEHEK AKNELNVVIH  360
DSLNPTMFKR NWNQFIEKYN LQDNE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G062000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623857.12e-83protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_021672394.12e-84protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2C9UA820.0A0A2C9UA82_MANES; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-16FAR1-related sequence 5