PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.16G058600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 327aa MW: 36784.2 Da PI: 6.575 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.6e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ ++ +G g+W+++++ g+ R++k+c++rw +yl Manes.16G058600.1.p 13 RGLWSPEEDEKLIKFITNHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ Manes.16G058600.1.p 66 RGSFTAQEERTIIDVHRILGNR-WSQIAKHLP-GRTDNEVKNFWNS 109 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-27 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.441 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-29 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-12 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.56E-11 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 25.673 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 64 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-15 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.68E-11 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MEHQCCSKQK VKRGLWSPEE DEKLIKFITN HGHGSWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGSFT AQEERTIIDV HRILGNRWSQ IAKHLPGRTD NEVKNFWNSC IKKKLSAQGL 120 DPNTHKLLSP SYRKNCYNNT PCGLSADSIY NPISSPSAFS IVSSQMKDFS MDEKQTPFIP 180 SFLSIPPPDS STSSSLHPLH ASTTCERQNS DIQGSHDHAS ESISMASVNT SCFDSNPSGF 240 EIIYDSRLWN DAIKPIQSSR HEEMLVEQVV EIGKTNEYLS AGQNMDASFE SSNFYLDLDF 300 AECTLLPEMY YSASSIDQLT WDLQAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-31 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.16G058600.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034654 | 1e-85 | KM034654.1 Jatropha curcas clone JcMYB034 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021596073.1 | 0.0 | transcription factor MYB7-like | ||||
TrEMBL | A0A2C9UA89 | 0.0 | A0A2C9UA89_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_029220m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3466 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 1e-80 | myb domain protein 67 |
Link Out ? help Back to Top | |
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Phytozome | Manes.16G058600.1.p |