PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Manes.16G057100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

LBD

Protein Properties

Length: 175aa MW: 19071.7 Da PI: 8.1334

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.16G057100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.1	9.7e-46	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lpe +r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l Manes.16G057100.1.p 13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPEYQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDAL 102 7*************************************************************************************** PP DUF260 91 kaelallkee 100 +++lal+++e Manes.16G057100.1.p 103 QTQLALAQAE 112 ***99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.927	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-45	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MKESGRKQGA ASPCAACKLL RRRCAQDCVF APYFPADEPQ KFANVHKVFG ASNVNKMLQE 60 LPEYQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID ALQTQLALAQ AEVVHLRVRQ 120 TTISHHQFQS VLSPTSPPSN SGSPSSRLVG SQIRPMFDMD MVDHASLGES MWSC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-50	9	114	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-50	9	114	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.16G057100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021596909.1	1e-128	LOB domain-containing protein 4-like
Swissprot	Q9SHE9	3e-79	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A2C9U993	1e-127	A0A2C9U993_MANES; Uncharacterized protein
STRING	cassava4.1_023995m	1e-128	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-74	LOB domain-containing protein 4

Link Out ? help Back to Top
Phytozome	Manes.16G057100.1.p