PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G055200.3.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 319aa    MW: 36304.7 Da    PI: 7.356
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G055200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.94.6e-54101391128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +ppGfrFhPtdeel+ +yLkkkv+ + ++l +vi+evd++k+ePwdL+ k ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg
  Manes.16G055200.3.p  10 VPPGFRFHPTDEELLYYYLKKKVSYEAVDL-DVIREVDLNKLEPWDLKdKcRIGSsPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATG 98 
                          69***************************9.99**************943433332556******************************* PP

                  NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +dk+++ ++++ +g++ktLvfy+grap+g+ktdW+mheyrl
  Manes.16G055200.3.p  99 RDKAIHLSNSQRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 139
                          ***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-596160IPR003441NAC domain
PROSITE profilePS5100557.9110160IPR003441NAC domain
PfamPF023653.0E-2811139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MMGGNGQLSV PPGFRFHPTD EELLYYYLKK KVSYEAVDLD VIREVDLNKL EPWDLKDKCR  60
IGSSPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIHLSNSQR IGMRKTLVFY  120
TGRAPHGQKT DWIMHEYRLD DDNSEVQQED GWVVCRVFKK KNQSRGFFPE AVQEHWSHMN  180
ASSSSASMEQ KQNHMQAPYD YSFDGSMHLP QLFSPESAVA PSFVSPFPMN SMDIECSQNL  240
LKLTSSGCGI VQPGERFNSD WSFLDKLLAS HQSLDQHSQS RGNPSSLVVD HVGCSSQQKF  300
PFPYLGCESD ILKFSKQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-52716517173NAC domain-containing protein 19
3swm_B6e-52716517173NAC domain-containing protein 19
3swm_C6e-52716517173NAC domain-containing protein 19
3swm_D6e-52716517173NAC domain-containing protein 19
3swp_A6e-52716517173NAC domain-containing protein 19
3swp_B6e-52716517173NAC domain-containing protein 19
3swp_C6e-52716517173NAC domain-containing protein 19
3swp_D6e-52716517173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G055200.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6052110.0KR605211.1 Manihot esculenta NAC transcription factors 73 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021597967.10.0protein SOMBRERO-like isoform X1
RefseqXP_021597969.10.0protein SOMBRERO-like isoform X3
RefseqXP_021597970.10.0protein SOMBRERO-like isoform X3
SwissprotQ9MA171e-121SMB_ARATH; Protein SOMBRERO
TrEMBLA0A251IYU10.0A0A251IYU1_MANES; Uncharacterized protein
TrEMBLA0A2C9U9250.0A0A2C9U925_MANES; Uncharacterized protein
STRINGcassava4.1_028269m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-104NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]
  4. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  5. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]