PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.16G038200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 268aa MW: 29186.3 Da PI: 8.9352 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.6 | 4.1e-12 | 77 | 124 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR+riN ++ Lr l+P kK++Ka+ L ++++ +k+L Manes.16G038200.1.p 77 KSHSEAEKRRRERINAHLASLRGLVPCG----EKKMDKATLLAEVINQVKEL 124 58************************96....69************999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.593 | 74 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.69E-10 | 77 | 126 | No hit | No description |
SuperFamily | SSF47459 | 4.06E-13 | 77 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.8E-10 | 77 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-13 | 78 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-10 | 80 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 1.08E-5 | 163 | 231 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 3.5E-4 | 164 | 210 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MISYNYNSSS ASSGHGYFNA LDPFSCSLEG SNGVLRGGSL VSQALVLDSE KGELVKAPAT 60 RIGKKGMSEA KVLAALKSHS EAEKRRRERI NAHLASLRGL VPCGEKKMDK ATLLAEVINQ 120 VKELKKNAME ASKGLLIPMD DDEVKVETHD NGTGHGTLSF KAFLCCEYRP ELLSDIRQAV 180 DSLQLKMVDA EISTLGSRLK LVLFLTSCRN KSAVDDHEAT QLLTNSIHQS LKSIMEKGYI 240 SAEYSPRTTL PNKRRRVSFF DSSSSSS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 252 | 256 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.16G038200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021596197.1 | 0.0 | transcription factor bHLH30-like isoform X1 | ||||
TrEMBL | A0A2C9UAB8 | 0.0 | A0A2C9UAB8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_025964m | 1e-173 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8986 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 7e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.16G038200.1.p |