PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G032500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 310aa    MW: 35113.5 Da    PI: 8.688
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G032500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.15.3e-34622021128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 
                          lp+G+rF+P+d+e++ e+L++kv ++       ++++   i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++   
  Manes.16G032500.1.p  62 LPAGVRFDPSDQEIL-EHLEAKVLSDMrklhplIDEFIPtIEGEnGICYTHPEKLP-GVSSDGQIRHFFHRPSKAYTTGTRKRRKVHtde 149
                          799***********9.99****999885665443333333665557**********.666777788******************744446 PP

                  NAM  80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                             + +W++tgk+++v+  +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Manes.16G032500.1.p 150 dgsETRWHKTGKTRPVFI-GGRVKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 202
                          555788************.9*************6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-3856221IPR003441NAC domain
PROSITE profilePS5100534.41462221IPR003441NAC domain
PfamPF023652.9E-1563202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MTWCNNNSVD ERAIQLITAN PKENTVIDTK IDELRTLTCP SCGHNIQLQD QGGGIIHDLP  60
ALPAGVRFDP SDQEILEHLE AKVLSDMRKL HPLIDEFIPT IEGENGICYT HPEKLPGVSS  120
DGQIRHFFHR PSKAYTTGTR KRRKVHTDED GSETRWHKTG KTRPVFIGGR VKGFKKILVL  180
YTNYGRQKKP EKTNWVMHQY HLGNNEEEKD GELVVSKVFY QTQPRQCGST IKDSLDQNLK  240
NRNTHENTSI SRNPALVDYY NPAAFISYGH ETHNRETPAQ LIPNMVVQGD GSSFIRFAAD  300
TSKGKLQRR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G032500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6052010.0KR605201.1 Manihot esculenta NAC transcription factors 63 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596486.10.0NAC domain-containing protein 10-like
RefseqXP_021596487.10.0NAC domain-containing protein 10-like
RefseqXP_021596488.10.0NAC domain-containing protein 10-like
SwissprotF4HY611e-124NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A2C9U8J00.0A0A2C9U8J0_MANES; Uncharacterized protein
STRINGcassava4.1_026710m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-126NAC domain containing protein 10
Publications ? help Back to Top
  1. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]