PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G030600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 253aa    MW: 27628.8 Da    PI: 9.7208
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G030600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-202979256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g+
  Manes.16G030600.1.p 29 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 79
                         69*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-322987IPR001471AP2/ERF domain
CDDcd000181.16E-182986No hitNo description
SuperFamilySSF541711.37E-222988IPR016177DNA-binding domain
PROSITE profilePS5103223.8942986IPR001471AP2/ERF domain
PfamPF008475.2E-142978IPR001471AP2/ERF domain
SMARTSM003802.5E-392992IPR001471AP2/ERF domain
PRINTSPR003675.3E-113041IPR001471AP2/ERF domain
PRINTSPR003675.3E-115268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAPRDKTAAV KPNGNCGAGA AAAGVKEVHF RGVRKRPWGR YAAEIRDPGK KSRVWLGTFD  60
TAEEAARAYD AAAREFRGAK AKTNFPLENE NVNRNIIVNK KNDTGSNNDS PSPSSTVESS  120
SREAPGRIME STSPLDLNLG PSAAVRFPFQ PVPTVGGVFT APMVNHQHVL YFDAMMKSQY  180
QRLLFDHQQQ QQQQQQQHLH HQTMSTAGNG VGGVVQSDSD SSSVVDLNQR EINPPRRSLD  240
FDLNLPPKPE IV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-212587164ATERF1
3gcc_A2e-212587164ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G030600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596279.10.0ethylene-responsive transcription factor 4-like
TrEMBLA0A2C9U8200.0A0A2C9U820_MANES; Uncharacterized protein
STRINGcassava4.1_014544m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.19e-27erf domain protein 9