PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.16G028800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 184aa MW: 20740.7 Da PI: 10.1263 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.1 | 3.1e-13 | 10 | 61 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 r+ ++ +Er+RR++++ ++L +llP++ +s+K +s ++ L +A +YIk+Lq Manes.16G028800.1.p 10 RTDKKTIERNRRNQMKALCSKLNSLLPHQ---SSRKpMSLSDQLDQAAKYIKKLQ 61 88999***********************8...78888*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.71E-7 | 7 | 65 | No hit | No description |
PROSITE profile | PS50888 | 11.763 | 8 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-12 | 9 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-9 | 10 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-11 | 10 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0044 | 14 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MENNSISSSR TDKKTIERNR RNQMKALCSK LNSLLPHQSS RKPMSLSDQL DQAAKYIKKL 60 QINLEKMRER KESLMGREER PPNSSSGSNG ATMRLRYPQI KVHEIGSALE VVLITGLETQ 120 FMFNEIIRIL HEEGAEIVNA SFSVLDDVVF HTIHSKVGDS SHSYGAARIS ERLKKFVPDA 180 NPF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.16G028800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021598063.1 | 1e-133 | transcription factor bHLH162 | ||||
Swissprot | F4JIJ7 | 3e-49 | BH162_ARATH; Transcription factor bHLH162 | ||||
TrEMBL | A0A2C9U8F7 | 1e-132 | A0A2C9U8F7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_021527m | 1e-133 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-51 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.16G028800.1.p |
Publications ? help Back to Top | |||
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