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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.16G027000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | LSD | ||||||||
Protein Properties | Length: 96aa MW: 10302.9 Da PI: 8.2104 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.3 | 5.2e-13 | 6 | 30 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP GA++V+C++C+ V Manes.16G027000.1.p 6 CGSCRSLLSYPKGARNVQCSSCQMV 30 ***********************98 PP | |||||||
2 | zf-LSD1 | 48.2 | 1.8e-15 | 44 | 68 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GA+sVRC++C+++ Manes.16G027000.1.p 44 CGGCAVLLMYPYGASSVRCSSCHFI 68 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 6.5E-16 | 3 | 33 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.5E-12 | 6 | 30 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.4E-13 | 41 | 69 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.6E-13 | 44 | 68 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MAQMVCGSCR SLLSYPKGAR NVQCSSCQMV NFVLEAHEIG QVNCGGCAVL LMYPYGASSV 60 RCSSCHFITE IGVHNRRPPW SVIQGYPPPS PNPVQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.16G027000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021598099.1 | 1e-64 | protein LOL2 | ||||
Swissprot | O65426 | 5e-37 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | A0A251JDJ6 | 3e-63 | A0A251JDJ6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_020122m | 5e-64 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13026 | 31 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 2e-39 | lsd one like 2 |
Link Out ? help Back to Top | |
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Phytozome | Manes.16G027000.1.p |