PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.16G015900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 211aa MW: 24076.5 Da PI: 4.7396 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.8 | 1.7e-12 | 43 | 87 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ErrRR+++ +++ Lr+l+P+ + ++Ka+i e A+ YI++Lq Manes.16G015900.1.p 43 LLAERRRRKKLSDRLLALRSLVPTI-----TNMNKATIIEDAITYIQELQ 87 578*********************6.....58*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.13E-16 | 34 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.44E-12 | 36 | 91 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.2E-16 | 36 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.51 | 37 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.1E-10 | 41 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-12 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MEFIGSSMNE FCITDEDNNR RYGRLGRRSV DYDDTREYKS KNLLAERRRR KKLSDRLLAL 60 RSLVPTITNM NKATIIEDAI TYIQELQQNV KLLSDQLLEM EASSEEAVQT RGDEIKAEEE 120 EMKQCGIMED VQVTNIDGNK LWIKIILEKK RGRFTRLIEA MTYLGLELTD TNVTTSKGAM 180 LVSSCVEGSY GDTLTVEQTK VFLLEIITSI * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 52 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in the control of tapetum development. Required for male fertility and pollen differentiation, especially during callose deposition. {ECO:0000269|PubMed:16831835}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00091 | SELEX | Transfer from AT4G21330 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.16G015900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021596333.1 | 1e-151 | transcription factor DYT1 | ||||
Swissprot | O81900 | 3e-49 | DYT1_ARATH; Transcription factor DYT1 | ||||
TrEMBL | A0A2C9U9M5 | 1e-150 | A0A2C9U9M5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_026927m | 1e-146 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5510 | 29 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21330.1 | 2e-40 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.16G015900.1.p |