PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

TALE

Protein Properties

Length: 361aa MW: 40601.7 Da PI: 6.5466

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.16G003000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.3e-09	288	322	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ Manes.16G003000.1.p 288 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 322 569*****************************885 PP
2	ELK	37.8	4.1e-13	242	263	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlr YsgyLgsLkqEF+ Manes.16G003000.1.p 242 ELKGQLLRRYSGYLGSLKQEFM 263 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	1.8E-19	107	151	IPR005540	KNOX1
Pfam	PF03790	5.8E-22	109	147	IPR005540	KNOX1
SMART	SM01256	3.3E-26	156	207	IPR005541	KNOX2
Pfam	PF03791	5.5E-21	159	206	IPR005541	KNOX2
PROSITE profile	PS51213	10.912	242	262	IPR005539	ELK domain
SMART	SM01188	8.6E-8	242	263	IPR005539	ELK domain
Pfam	PF03789	1.8E-10	242	263	IPR005539	ELK domain
PROSITE profile	PS50071	12.989	262	325	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.05E-19	264	338	IPR009057	Homeodomain-like
SMART	SM00389	7.4E-13	264	329	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.6E-28	267	327	IPR009057	Homeodomain-like
CDD	cd00086	1.63E-12	274	326	No hit	No description
Pfam	PF05920	6.5E-17	282	321	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	300	323	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048440	Biological Process	carpel development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MEGGSNSTSC MMAFGDNSNG LCPMMMMMPL MTSHHHHHHH HHPPPPPPPH PNADSSSNTL 60 FLPLPPTNNQ DQNRNSGSGS STILDDHNHN NSNIGCYFMD NNDSNIPSVK AKIMAHPHYH 120 RLLAAYINCQ KVGAPPDVVA RLEDACASAA AMGPTGTSCI GEDPALDQFM EAYCEMLTKY 180 EQELSKPFKE AMLFLQRVEC QFKALTVSSP NSACGEGNER NGSSEEEVDV NNFIDPQAED 240 QELKGQLLRR YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL DWWSRHYKWP YPSESQKLAL 300 AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHSH YYMDNVLGNP FPMDISPTLL 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MEGGSNSTSC MMAFGDNSNG LCPMMMMMPL MTSHHHHHHH HHPPPPPPPH PNADSSSNTL  60
FLPLPPTNNQ DQNRNSGSGS STILDDHNHN NSNIGCYFMD NNDSNIPSVK AKIMAHPHYH  120
RLLAAYINCQ KVGAPPDVVA RLEDACASAA AMGPTGTSCI GEDPALDQFM EAYCEMLTKY  180
EQELSKPFKE AMLFLQRVEC QFKALTVSSP NSACGEGNER NGSSEEEVDV NNFIDPQAED  240
QELKGQLLRR YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL DWWSRHYKWP YPSESQKLAL  300
AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHSH YYMDNVLGNP FPMDISPTLL  360
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	257	266	LKQEFMKKRK
2	263	267	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.16G003000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021596257.1	0.0	homeobox protein SBH1
Swissprot	P46608	1e-161	HSBH1_SOYBN; Homeobox protein SBH1
TrEMBL	A0A2C9U7J4	0.0	A0A2C9U7J4_MANES; Uncharacterized protein
STRING	cassava4.1_010444m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2039	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-136	KNOX/ELK homeobox transcription factor

Link Out ? help Back to Top
Phytozome	Manes.16G003000.1.p

Publications ? help Back to Top
Shu Y, et al. GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean. Plant Cell Rep., 2015. 34(11): p. 1927-37 [PMID:26205508]