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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.15G163100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB_related | ||||||||
Protein Properties | Length: 81aa MW: 8851.83 Da PI: 9.4879 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.8 | 3.3e-10 | 7 | 51 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 g+WT++ + + +a + + ++ +W+ +a+ +g g+t++++k ++ Manes.15G163100.2.p 7 GSWTAQQNKAFEKALAVYDKDtpeRWANVAKAVG-GKTAEEVKRHY 51 89********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.794 | 4 | 59 | IPR017884 | SANT domain |
SMART | SM00717 | 7.6E-9 | 5 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-6 | 7 | 61 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.1E-8 | 7 | 51 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.66E-13 | 7 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.78E-8 | 8 | 51 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MSSRGSGSWT AQQNKAFEKA LAVYDKDTPE RWANVAKAVG GKTAEEVKRH YEILVEDVKY 60 IESGQVPFPN YRTTGGSTRG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-41 | 2 | 79 | 3 | 81 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.15G163100.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021594282.1 | 5e-54 | protein RADIALIS-like 1 isoform X1 | ||||
Swissprot | Q58FS3 | 2e-41 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A2C9UGM6 | 1e-52 | A0A2C9UGM6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_028739m | 1e-53 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 3e-40 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.15G163100.2.p |
Publications ? help Back to Top | |||
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