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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.15G162900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 9890.85 Da PI: 7.6803 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.7 | 1.7e-10 | 16 | 62 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +W++ E +l+ a +++ ++ +W Ia+ +g gR+++++k ++q + Manes.15G162900.1.p 16 SWSPRENKLFEIALALYDKEttdRWQNIAKAVG-GRSAEEVKTHYQLL 62 7*****************99*************.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.911 | 9 | 63 | IPR017877 | Myb-like domain |
SMART | SM00717 | 6.6E-8 | 13 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-6 | 14 | 64 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.07E-13 | 15 | 71 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-8 | 16 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-5 | 21 | 63 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MSSSSYQASR NPSSSSWSPR ENKLFEIALA LYDKETTDRW QNIAKAVGGR SAEEVKTHYQ 60 LLIKDVEHIE SGRVPFPNYN SGRSQADA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-29 | 7 | 81 | 1 | 75 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.15G162900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021660681.1 | 8e-43 | protein RADIALIS-like 3 | ||||
Swissprot | Q58FS3 | 1e-28 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A2C9UHK1 | 1e-58 | A0A2C9UHK1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_028960m | 2e-59 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 4e-28 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Manes.15G162900.1.p |
Publications ? help Back to Top | |||
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