PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.15G162600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | WRKY | ||||||||
Protein Properties | Length: 184aa MW: 21007.6 Da PI: 10.0729 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.4 | 6.3e-33 | 104 | 162 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ +v++tYeg H+h+ Manes.15G162600.1.p 104 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGTVITTYEGMHTHP 162 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-34 | 89 | 162 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.15E-30 | 96 | 163 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.964 | 99 | 164 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-39 | 104 | 163 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.3E-27 | 105 | 162 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MEKFQMLFPF SSAGPPSCSL SSTLTNSHGF NNFQGDNPNG FLGLKIDNQV PRTEEFKDLN 60 SSSSQSINFS VGSETELKSG QKKGGKKIRK PRYAFQTRSR VDILDDGYRW RKYGQKAVKN 120 NKFPRSYYRC THQGCNVKKQ VQRLTKDEGT VITTYEGMHT HPIEKQTDNF EQILNQMQIY 180 TPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-27 | 94 | 163 | 7 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 3e-27 | 94 | 163 | 7 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.15G162600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT827649 | 0.0 | KT827649.1 Manihot esculenta WRKY transcription factor 74 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021594309.1 | 1e-136 | probable WRKY transcription factor 75 | ||||
Swissprot | Q9FYA2 | 1e-53 | WRK75_ARATH; Probable WRKY transcription factor 75 | ||||
TrEMBL | A0A140H8S8 | 1e-135 | A0A140H8S8_MANES; WRKY transcription factor 74 | ||||
STRING | cassava4.1_017214m | 1e-135 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1156 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 1e-55 | WRKY DNA-binding protein 75 |
Link Out ? help Back to Top | |
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Phytozome | Manes.15G162600.1.p |