PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.15G155500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 818aa MW: 94501.6 Da PI: 6.6813

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.15G155500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.2	1.2e-22	139	225	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA GFs+rk+ +ks+ ng +++r+++C+++g+r +++ + + r++r etrtgC a++++ ++ gk++vt++e++HnHe++ Manes.15G155500.1.p 139 CYSRYAVLEGFSIRKDFVNKSRINGDVVSRRYTCYRQGYRPTKHIS--NVRKPRHETRTGCLAHMTIARQPYGKFRVTRFETQHNHEFV 225 7*************************************999888..99***********************************97 PP
2	FAR1	91.5	1.1e-28	273	361	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA +vGFsvrk++ ++sk +g + +r+f+C +eg+r++++++ + +r+r+etr+gC a+l++++++dgk++vt++e++HnHel+ Manes.15G155500.1.p 273 EFYNAYAGRVGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQKDNRD-LNVKRPRKETRIGCMAQLVISRQSDGKYRVTHFEEKHNHELV 361 6*****************************************999.9999**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-21	139	225	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.1E-25	273	361	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-26	482	575	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.594	762	798	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0014	773	800	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence Send to blast
MDGHEPDTLS YVQKEVVENE LQGSSAVEAA AEQEHPCLEA SSVEKSLGFI ESEHDCQSRE 60 AGSSNDRSGV EFDGQDCDSP KSSVNKSDTH FEDDLESQSP NVPVVDVSGS VVAVKKEEEG 120 YVVPKVGVEF ETEDHAYKCY SRYAVLEGFS IRKDFVNKSR INGDVVSRRY TCYRQGYRPT 180 KHISNVRKPR HETRTGCLAH MTIARQPYGK FRVTRFETQH NHEFVTPSTA HMLPSQKRLT 240 FAQAVEADLA KSSGLDRIPK LGMGFDSEDH AYEFYNAYAG RVGFSVRKDY VNRSKIDGAV 300 ASRRFTCFRE GFRQKDNRDL NVKRPRKETR IGCMAQLVIS RQSDGKYRVT HFEEKHNHEL 360 VAACRVRTLR SQKRQATAQV EGNGVDGSTT QPKLVSGLLC NAVGDQDVHG YQPIDCNSKL 420 PFRKMRDMKE GEAERLQQYF QSKQLKNPSF FYSMQLDADD QITNIFWADA KMLVDYNDFG 480 DVVCFDTSYR LYKDCRPFVA FIGVNHHKQM MVFSAGFLYD ETIDSYKWLF RTFIEAMSGK 540 KPKTILTDQD AVIAEAIDSV LPEVHCRICV WHVYQRAVKQ LNHMFVGSGS FINDLSSCFF 600 EHEEDEPFIN AWNNMLDAYG LWENEWLHQM FKEREQWATA YGRHIFCADI RNVQLCESFT 660 ASLRKYLKFD FEVISFFKHL GKILNDWHYK ELEDNYDMSQ RLPRVMGDVI LLKHAREIYT 720 PKIFELLQQE YETSLNILIN QCTENGSMFE YKVSIYGQQQ EYRVRFNSSE DIVACDCMKF 780 EFMGVLCCHA LKVLDFRNIK MLPSQYILKR WTRDARV*

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence Send to blast

MDGHEPDTLS YVQKEVVENE LQGSSAVEAA AEQEHPCLEA SSVEKSLGFI ESEHDCQSRE  60
AGSSNDRSGV EFDGQDCDSP KSSVNKSDTH FEDDLESQSP NVPVVDVSGS VVAVKKEEEG  120
YVVPKVGVEF ETEDHAYKCY SRYAVLEGFS IRKDFVNKSR INGDVVSRRY TCYRQGYRPT  180
KHISNVRKPR HETRTGCLAH MTIARQPYGK FRVTRFETQH NHEFVTPSTA HMLPSQKRLT  240
FAQAVEADLA KSSGLDRIPK LGMGFDSEDH AYEFYNAYAG RVGFSVRKDY VNRSKIDGAV  300
ASRRFTCFRE GFRQKDNRDL NVKRPRKETR IGCMAQLVIS RQSDGKYRVT HFEEKHNHEL  360
VAACRVRTLR SQKRQATAQV EGNGVDGSTT QPKLVSGLLC NAVGDQDVHG YQPIDCNSKL  420
PFRKMRDMKE GEAERLQQYF QSKQLKNPSF FYSMQLDADD QITNIFWADA KMLVDYNDFG  480
DVVCFDTSYR LYKDCRPFVA FIGVNHHKQM MVFSAGFLYD ETIDSYKWLF RTFIEAMSGK  540
KPKTILTDQD AVIAEAIDSV LPEVHCRICV WHVYQRAVKQ LNHMFVGSGS FINDLSSCFF  600
EHEEDEPFIN AWNNMLDAYG LWENEWLHQM FKEREQWATA YGRHIFCADI RNVQLCESFT  660
ASLRKYLKFD FEVISFFKHL GKILNDWHYK ELEDNYDMSQ RLPRVMGDVI LLKHAREIYT  720
PKIFELLQQE YETSLNILIN QCTENGSMFE YKVSIYGQQQ EYRVRFNSSE DIVACDCMKF  780
EFMGVLCCHA LKVLDFRNIK MLPSQYILKR WTRDARV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.15G155500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021593444.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2C9UGE1	0.0	A0A2C9UGE1_MANES; Uncharacterized protein
STRING	EOY02643	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-122	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Manes.15G155500.1.p