PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G151500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 412aa    MW: 45724.7 Da    PI: 5.6421
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G151500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.82.3e-32551971128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 
                          lp+G++F+P+d e++ e+L++k+  +       +   +      +++ +i++++P++Lp  +k++ ++++fF+++ ++yatg+rk+r+  
  Manes.15G151500.1.p  55 LPAGVKFDPSDAEIL-EHLAAKCGVEGskphafI---DefiptLVEDKGICYTHPENLP-GAKKDGSSIHFFHRTINAYATGQRKRRKvh 139
                          799***********9.999999665553355442...144443478889**********.556778899******************757 PP

                  NAM  78 ......tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                                 ++ +W++tgk+k+v++ +g ++g kk++v+yk+  + +k+ k++Wvmhey+l
  Manes.15G151500.1.p 140 seqgstEEHVRWHKTGKTKPVME-NGIQKGYKKIMVLYKNtkKGSKPDKSNWVMHEYHL 197
                          77777444788************.99************6422667778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-3540216IPR003441NAC domain
PROSITE profilePS5100530.43555216IPR003441NAC domain
PfamPF023657.4E-1456197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MARAWLIDSR TIARKVRNPA RASVYQIKGY GANCECPNCH HFIDNGDVSH DWPGLPAGVK  60
FDPSDAEILE HLAAKCGVEG SKPHAFIDEF IPTLVEDKGI CYTHPENLPG AKKDGSSIHF  120
FHRTINAYAT GQRKRRKVHS EQGSTEEHVR WHKTGKTKPV MENGIQKGYK KIMVLYKNTK  180
KGSKPDKSNW VMHEYHLGTD EDEKEGEYAV SKILYQQQKQ TDMNDDGLTI EDSDILAHNT  240
SPRTPIANPP NPPRPKISDA FDDTVDEKVF HSVQEEDIIK GASHIPAHCV HQNEVGDPAW  300
LAGESQGVEN PDFSGIHDSL LCKEIFDSSS LFLNGSTLNN ISYCGTASNT KQLTGNNDSN  360
KNNNNAPCGI ADLENLDFDT PPDFQLADLQ FSSQDLQFSS QDSILGWIDQ L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G151500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6052100.0KR605210.1 Manihot esculenta NAC transcription factors 72 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594205.10.0NAC domain-containing protein 73-like
TrEMBLA0A2C9UFZ40.0A0A2C9UFZ4_MANES; Uncharacterized protein
STRINGcassava4.1_027882m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.13e-99NAC domain containing protein 44
Publications ? help Back to Top
  1. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]